Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom.
Department of Biomedical Sciences, Cardiff Metropolitan University, Cardiff, United Kingdom.
Appl Environ Microbiol. 2020 Jan 7;86(2). doi: 10.1128/AEM.01931-19.
spp. are common soil-dwelling organisms which kill and consume prey microbes through the secretion of antimicrobial substances. Two species of have been described previously ( and ). A polyphasic approach, including biochemical analysis of fatty acid methyl esters, substrate utilization, and sugar assimilation assays, was taken to characterize eight species strains and the two type strains. The genomes of all strains, including that of DSM 14696 (newly reported here), shared an average nucleotide identity below 95% and digital DNA-DNA hybridization scores of less than 70%, indicating that they belong to distinct species. In addition, we characterized the prey range and antibiotic resistance profile of each strain, illustrating the diversity of antimicrobial activity and, thus, the potential for drug discovery within the genus. Each strain gave a distinct profile of properties, which together with their genomic differences supports the proposal of the eight candidate strains as novel species. The eight candidates are as follows: sp. nov. (AB043A DSM 108849 = NBRC 113887), sp. nov. (AB047A DSM 108843 = NBRC 113888), sp. nov. (AB050A = DSM 108846 = NBRC 114019), sp. nov. (CA031B DSM 108841 = NBRC 113889), sp. nov. (CA040B DSM 108850 = NBRC 113890), sp. nov. (CA043D DSM 108842 = NBRC 113891), sp. nov. (CA051B DSM 108844 = NBRC 114100), and sp. nov. (CA054A DSM 108848 = NBRC 113892). is a genus of predators with broad prey ranges, whose genomes contain large numbers of gene clusters for secondary metabolite biosynthesis. The physiology and evolutionary heritage of eight species strains were characterized using a range of analyses and assays. Multiple metrics confirmed that each strain belonged to a novel species within the genus. The strains exhibited distinct patterns of drug resistance and predatory activity, which mirrored their possession of diverse sets of biosynthetic genes. The breadth of antimicrobial activities observed within the genus highlights their potential for drug discovery and suggests a previous underestimation of both their taxonomic diversity and biotechnological potential. Taxonomic assignment of environmental isolates to novel species allows us to begin to characterize the diversity and evolution of members of this bacterial genus with potential biotechnological importance, guiding future bioprospecting efforts for novel biologically active metabolites and antimicrobials.
spp. 是常见的土壤栖居生物,通过分泌抗菌物质杀死和消耗猎物微生物。先前已经描述了两种 (和)。采用多相方法,包括脂肪酸甲酯的生化分析、底物利用和糖同化测定,对 8 种 菌株和两种模式菌株进行了表征。所有菌株的基因组,包括 DSM 14696 (此处新报告)的基因组,平均核苷酸同一性低于 95%,数字 DNA-DNA 杂交评分低于 70%,表明它们属于不同的物种。此外,我们还描述了每个菌株的猎物范围和抗生素抗性谱,说明了抗菌活性的多样性,因此,在 属内具有药物发现的潜力。每个菌株都表现出不同的特性,加上它们的基因组差异,支持了将这 8 个候选菌株作为新物种的提议。这 8 个候选者如下:sp. nov.(AB043A DSM 108849 = NBRC 113887),sp. nov.(AB047A DSM 108843 = NBRC 113888),sp. nov.(AB050A = DSM 108846 = NBRC 114019),sp. nov.(CA031B DSM 108841 = NBRC 113889),sp. nov.(CA040B DSM 108850 = NBRC 113890),sp. nov.(CA043D DSM 108842 = NBRC 113891),sp. nov.(CA051B DSM 108844 = NBRC 114100),和 sp. nov.(CA054A DSM 108848 = NBRC 113892)。 是一个具有广泛猎物范围的捕食者属,其基因组包含大量用于次生代谢物生物合成的基因簇。使用一系列分析和测定方法,对 8 种 菌株的生理学和进化遗产进行了表征。多种指标证实,每个菌株都属于 属内的一个新物种。菌株表现出不同的耐药性和捕食活性模式,这反映了它们拥有多样化的生物合成基因集。在 属中观察到的广泛的抗菌活性突出了它们在药物发现方面的潜力,并表明以前对它们的分类多样性和生物技术潜力都低估了。将环境分离物分类为新物种使我们能够开始描述具有潜在生物技术重要性的这种细菌属成员的多样性和进化,指导未来对新型生物活性代谢物和抗菌药物的生物勘探工作。