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转录相互作用网络对基因组施加线性约束。

The network of transcriptional interactions imposes linear constrains in the genome.

作者信息

Menchaca-Mendez Ricardo, Janga Sarath Chandra, Collado-Vides Julio

机构信息

Program of Computational Genomics, Centro de Ciencias Genómicas (CCG)-UNAM, Morelos, Mexico.

出版信息

OMICS. 2005 Summer;9(2):139-45. doi: 10.1089/omi.2005.9.139.

DOI:10.1089/omi.2005.9.139
PMID:15969646
Abstract

Two prokaryotic organisms for which transcriptional regulatory interactions have been well elucidated by experimental means are Escherichia coli and Bacillus subtilis. Here we show, with the help of simulations and from known data, the importance of proximity of the transcription factor gene and the respective regulated gene in regulatory networks. We discuss the importance of the location of external sensing machinery close to the genes for transcription factors that regulate them in light of our finding.

摘要

通过实验手段已充分阐明转录调控相互作用的两种原核生物是大肠杆菌和枯草芽孢杆菌。在此,我们借助模拟并依据已知数据,展示了转录因子基因与各自调控基因在调控网络中的接近程度的重要性。鉴于我们的发现,我们讨论了外部传感机制靠近调控它们的转录因子基因的位置的重要性。

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The network of transcriptional interactions imposes linear constrains in the genome.转录相互作用网络对基因组施加线性约束。
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引用本文的文献

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Transcriptional regulation shapes the organization of genes on bacterial chromosomes.转录调控塑造了细菌染色体上基因的组织形式。
Nucleic Acids Res. 2009 Jun;37(11):3680-8. doi: 10.1093/nar/gkp231. Epub 2009 Apr 16.
2
Principles of transcriptional regulation and evolution of the metabolic system in E. coli.大肠杆菌转录调控原理与代谢系统的进化
Genome Res. 2009 Jan;19(1):79-91. doi: 10.1101/gr.079715.108. Epub 2008 Oct 3.
3
Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria.
转录单元重排对γ-变形菌调控网络进化的影响
BMC Genomics. 2008 Mar 17;9:128. doi: 10.1186/1471-2164-9-128.
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Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli.大肠杆菌转录调控网络中传感机制的协调逻辑。
Nucleic Acids Res. 2007;35(20):6963-72. doi: 10.1093/nar/gkm743. Epub 2007 Oct 12.