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植物乳杆菌中硫胺素二磷酸和黄素腺嘌呤二核苷酸依赖性丙酮酸氧化酶的自由基磷酸转移机制。通过瞬态黄素腺嘌呤二核苷酸半醌/羟乙基硫胺素二磷酸自由基对,辅因子间电子转移与磷酸转移至乙酰硫胺素二磷酸的动力学偶联。

Radical phosphate transfer mechanism for the thiamin diphosphate- and FAD-dependent pyruvate oxidase from Lactobacillus plantarum. Kinetic coupling of intercofactor electron transfer with phosphate transfer to acetyl-thiamin diphosphate via a transient FAD semiquinone/hydroxyethyl-ThDP radical pair.

作者信息

Tittmann Kai, Wille Georg, Golbik Ralph, Weidner Annett, Ghisla Sandro, Hübner Gerhard

机构信息

Institut für Biochemie, Martin-Luther-Universität Halle-Wittenberg, Kurt-Mothes-Strasse 3, D-06120 Halle/Saale, Germany.

出版信息

Biochemistry. 2005 Oct 11;44(40):13291-303. doi: 10.1021/bi051058z.

Abstract

The thiamin diphosphate (ThDP)- and flavin adenine dinucleotide (FAD)-dependent pyruvate oxidase from Lactobacillus plantarum catalyses the conversion of pyruvate, inorganic phosphate, and oxygen to acetyl-phosphate, carbon dioxide, and hydrogen peroxide. Central to the catalytic sequence, two reducing equivalents are transferred from the resonant carbanion/enamine forms of alpha-hydroxyethyl-ThDP to the adjacent flavin cofactor over a distance of approximately 7 A, followed by the phosphorolysis of the thereby formed acetyl-ThDP. Pre-steady-state and steady-state kinetics using time-resolved spectroscopy and a 1H NMR-based intermediate analysis indicate that both processes are kinetically coupled. In the presence of phosphate, intercofactor electron-transfer (ET) proceeds with an apparent first-order rate constant of 78 s(-1) and is kinetically gated by the preceding formation of the tetrahedral substrate-ThDP adduct 2-lactyl-ThDP and its decarboxylation. No transient flavin radicals are detectable in the reductive half-reaction. In contrast, when phosphate is absent, ET occurs in two discrete steps with apparent rate constants of 81 and 3 s(-1) and transient formation of a flavin semiquinone/hydroxyethyl-ThDP radical pair. Temperature dependence analysis according to the Marcus theory identifies the second step, the slow radical decay to be a true ET reaction. The redox potentials of the FAD(ox)/FAD(sq) (E1 = -37 mV) and FAD(sq)/FAD(red) (E2 = -87 mV) redox couples in the absence and presence of phosphate are identical. Both the Marcus analysis and fluorescence resonance energy-transfer studies using the fluorescent N3'-pyridyl-ThDP indicate the same cofactor distance in the presence or absence of phosphate. We deduce that the exclusive 10(2)-10(3)-fold rate enhancement of the second ET step is rather due to the nucleophilic attack of phosphate on the kinetically stabilized hydroxyethyl-ThDP radical resulting in a low-potential anion radical adduct than phosphate in a docking site being part of a through-bonded ET pathway in a stepwise mechanism of ET and phosphorolysis. Thus, LpPOX would constitute the first example of a radical-based phosphorolysis mechanism in biochemistry.

摘要

植物乳杆菌中依赖硫胺素二磷酸(ThDP)和黄素腺嘌呤二核苷酸(FAD)的丙酮酸氧化酶催化丙酮酸、无机磷酸和氧气转化为乙酰磷酸、二氧化碳和过氧化氢。在催化序列的核心部分,两个还原当量从α-羟乙基-ThDP的共振碳负离子/烯胺形式转移到相邻的黄素辅因子,转移距离约为7 Å,随后对由此形成的乙酰-ThDP进行磷酸解。使用时间分辨光谱和基于1H NMR的中间体分析进行的预稳态和稳态动力学表明,这两个过程在动力学上是耦合的。在磷酸盐存在的情况下,辅因子间电子转移(ET)以78 s(-1)的表观一级速率常数进行,并且在动力学上受四面体底物-ThDP加合物2-乳酰基-ThDP的先前形成及其脱羧作用的控制。在还原半反应中未检测到瞬态黄素自由基。相反,当不存在磷酸盐时,ET分两个离散步骤发生,表观速率常数分别为81和3 s(-1),并瞬态形成黄素半醌/羟乙基-ThDP自由基对。根据马库斯理论进行的温度依赖性分析确定第二步,即缓慢的自由基衰减是真正的ET反应。在存在和不存在磷酸盐的情况下,FAD(ox)/FAD(sq)(E1 = -37 mV)和FAD(sq)/FAD(red)(E2 = -87 mV)氧化还原对的氧化还原电位相同。马库斯分析和使用荧光N3'-吡啶基-ThDP的荧光共振能量转移研究均表明,在存在或不存在磷酸盐的情况下,辅因子距离相同。我们推断,第二个ET步骤的10(2)-10(3)倍速率增强是由于磷酸盐对动力学稳定的羟乙基-ThDP自由基的亲核攻击导致形成低电位阴离子自由基加合物,而不是磷酸盐位于对接位点中作为逐步ET和磷酸解机制中通过键合ET途径的一部分。因此,LpPOX将构成生物化学中基于自由基的磷酸解机制的第一个例子。

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