Lin Bin, Braster Martin, van Breukelen Boris M, van Verseveld Henk W, Westerhoff Hans V, Röling Wilfred F M
Department of Molecular Cell Physiology, Faculty of Earth and Life Sciences, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands.
Appl Environ Microbiol. 2005 Oct;71(10):5983-91. doi: 10.1128/AEM.71.10.5983-5991.2005.
Relationships between community composition of the iron-reducing Geobacteraceae, pollution levels, and the occurrence of biodegradation were established for an iron-reducing aquifer polluted with landfill leachate by using cultivation-independent Geobacteraceae 16S rRNA gene-targeting techniques. Numerical analysis of denaturing gradient gel electrophoresis (DGGE) profiles and sequencing revealed a high Geobacteraceae diversity and showed that community composition within the leachate plume differed considerably from that of the unpolluted aquifer. This suggests that pollution has selected for specific species out of a large pool of Geobacteraceae. DGGE profiles of polluted groundwater taken near the landfill (6- to 39-m distance) clustered together. DGGE profiles from less-polluted groundwater taken further downstream did not fall in the same cluster. Several individual DGGE bands were indicative of either the redox process or the level of pollution. This included a pollution-indicative band that dominated the DGGE profiles from groundwater samples taken close to the landfill (6 to 39 m distance). The clustering of these profiles and the dominance by a single DGGE band corresponded to the part of the aquifer where organic micropollutants and reactive dissolved organic matter were attenuated at relatively high rates.
通过使用不依赖培养的靶向地杆菌科16S rRNA基因的技术,确定了受垃圾渗滤液污染的铁还原含水层中,铁还原地杆菌科的群落组成、污染水平和生物降解发生情况之间的关系。变性梯度凝胶电泳(DGGE)图谱的数值分析和测序显示,地杆菌科具有高度的多样性,并表明渗滤液羽流中的群落组成与未受污染的含水层有很大差异。这表明污染从大量的地杆菌科物种中选择了特定的物种。在垃圾填埋场附近(距离6至39米)采集的受污染地下水的DGGE图谱聚集在一起。从下游更远位置采集的污染程度较轻的地下水的DGGE图谱没有落在同一个簇中。几个单独的DGGE条带表明了氧化还原过程或污染水平。这包括一个指示污染的条带,它在靠近垃圾填埋场(距离6至39米)采集的地下水样本的DGGE图谱中占主导地位。这些图谱的聚类以及单个DGGE条带的主导地位与含水层中有机微污染物和活性溶解有机物以相对较高速率衰减的部分相对应。