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用于组氨酸和色氨酸残基中芳香族质子及直接相连杂核的完全共振归属的三共振方法。

Triple-resonance methods for complete resonance assignment of aromatic protons and directly bound heteronuclei in histidine and tryptophan residues.

作者信息

Löhr Frank, Rogov Vladimir V, Shi Meichen, Bernhard Frank, Dötsch Volker

机构信息

Institute of Biophysical Chemistry, Centre for Biomolecular Magnetic Resonance, Johann Wolfgang Goethe-University, Frankfurt am Main, Biozentrum N230, 1. OG, Marie Curie-Strasse 9, D-60439, Frankfurt, Germany.

出版信息

J Biomol NMR. 2005 Aug;32(4):309-28. doi: 10.1007/s10858-005-1195-4.

Abstract

A set of three experiments is described which correlate aromatic resonances of histidine and tryptophan residues with amide resonances in 13C/15N-labelled proteins. Provided that backbone 1H and 15N positions of the sequentially following residues are known, this results in sequence-specific assignment of histidine 1H(delta2)/13C(delta2) and 1H(epsilon1)/13C(epsilon1) as well as tryptophan 1H(delta1)/13C(delta1), 1H(zeta2)/13C(zeta2), 1H(eta2)/13C(eta2), 1H(epsilon3)/13C(epsilon3), 1H(zeta3)/13C(zeta3) and 1H(epsilon1)/15N(epsilon1) chemical shifts. In the reverse situation, these residues can be located in the 1H-(15)N correlation map to facilitate backbone assignments. It may be chosen between selective versions for either of the two amino acid types or simultaneous detection of both with complete discrimination against phenylalanine or tyrosine residues in each case. The linkages between delta-proton/carbon and the remaining aromatic as well as backbone resonances do not rely on through-space interactions, which may be ambiguous, but exclusively employ one-bond scalar couplings for magnetization transfer instead. Knowledge of these aromatic chemical shifts is the prerequisite for the analysis of NOESY spectra, the study of protein-ligand interactions involving histidine and tryptophan residues and the monitoring of imidazole protonation states during pH titrations. The new methods are demonstrated with five different proteins with molecular weights ranging from 11 to 28 kDa.

摘要

本文描述了一组三个实验,这些实验将组氨酸和色氨酸残基的芳香族共振与13C/15N标记蛋白质中的酰胺共振相关联。倘若已知连续后续残基的主链1H和15N位置,这将导致组氨酸1H(δ2)/13C(δ2)、1H(ε1)/13C(ε1)以及色氨酸1H(δ1)/13C(δ1)、1H(ζ2)/13C(ζ2)、1H(η2)/13C(η2)、1H(ε3)/13C(ε3)、1H(ζ3)/13C(ζ3)和1H(ε1)/15N(ε1)化学位移的序列特异性归属。在相反的情况下,这些残基可在1H-(15)N相关图谱中定位,以促进主链归属。可以选择针对两种氨基酸类型中任一种的选择性版本,或者在每种情况下同时检测两者并完全区分苯丙氨酸或酪氨酸残基。δ-质子/碳与其余芳香族以及主链共振之间的连接不依赖于可能模糊的空间相互作用,而是专门采用一键标量耦合进行磁化转移。了解这些芳香族化学位移是分析NOESY谱、研究涉及组氨酸和色氨酸残基的蛋白质-配体相互作用以及监测pH滴定过程中咪唑质子化状态的前提条件。用五种分子量范围为11至28 kDa的不同蛋白质展示了这些新方法。

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