• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用锁定核苷构建DNA拓扑结构:一项结构研究。

Engineering DNA topology with locked nucleosides: a structural study.

作者信息

Maderia Melissa, Wu Justin, Bax Ad, Shenoy Shilpa, O'Keefe Barry, Marquez Victor E, Barchi Joseph J

机构信息

Laboratory of Medicinal Chemistry, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.

出版信息

Nucleosides Nucleotides Nucleic Acids. 2005;24(5-7):687-90. doi: 10.1081/ncn-200060256.

DOI:10.1081/ncn-200060256
PMID:16248015
Abstract

DNA dodecamers modified with nucleotide building blocks based on a bicyclo[3. 1.0]hexane system that effectively locks the ribose template into an RNA-like or North (N) conformation were analyzed by various biophysical techniques including high field nuclear magnetic resonance (NMR). Replacement of either one or both of the center thymidines in the Dickerson Drew dodecamer (CGCGAATTCGCG) caused a progressive shift in the bending propensity of the double helix as shown by a newly developed rapid technique that compares the residual dipolar coupling (RDC) values of the modified duplexes with those previously determined for the native DNA.

摘要

基于双环[3.1.0]己烷系统的核苷酸构建块修饰的DNA十二聚体,能有效地将核糖模板锁定为RNA样或North(N)构象,通过包括高场核磁共振(NMR)在内的各种生物物理技术进行了分析。迪克森·德鲁十二聚体(CGCGAATTCGCG)中一个或两个中心胸腺嘧啶的替换,导致双螺旋弯曲倾向逐渐改变,这是通过一种新开发的快速技术显示的,该技术将修饰双链体的剩余偶极耦合(RDC)值与先前测定的天然DNA的RDC值进行比较。

相似文献

1
Engineering DNA topology with locked nucleosides: a structural study.利用锁定核苷构建DNA拓扑结构:一项结构研究。
Nucleosides Nucleotides Nucleic Acids. 2005;24(5-7):687-90. doi: 10.1081/ncn-200060256.
2
Biophysical studies of DNA modified with conformationally constrained nucleotides: comparison of 2'-exo (north) and 3'-exo (south) 'locked' templates.用构象受限核苷酸修饰的DNA的生物物理研究:2'-外向(北)和3'-外向(南)“锁定”模板的比较
Nucleic Acids Res. 2007;35(6):1978-91. doi: 10.1093/nar/gkm025. Epub 2007 Mar 6.
3
Comparative conformational analysis of nucleosides by NMR, X-ray, and semi-empirical (PM3 VS. AM1) methods.通过核磁共振、X射线和半经验方法(PM3与AM1)对核苷进行构象比较分析。
Nucleosides Nucleotides Nucleic Acids. 2005;24(5-7):701-5. doi: 10.1081/ncn-200060278.
4
Changes in DNA bending induced by restricting nucleotide ring pucker studied by weak alignment NMR spectroscopy.通过弱排列核磁共振光谱研究限制核苷酸环皱折引起的DNA弯曲变化。
Proc Natl Acad Sci U S A. 2005 Jan 4;102(1):24-8. doi: 10.1073/pnas.0408498102. Epub 2004 Dec 23.
5
The conformational study of two carbocyclic nucleosides: why carbocyclic nucleic acids (CarNAs) form more stable duplexes with RNA than DNA does.两种碳环核苷的构象研究:为何碳环核酸(CarNAs)与RNA形成的双链比与DNA形成的双链更稳定。
J Biomol Struct Dyn. 2002 Dec;20(3):437-46. doi: 10.1080/07391102.2002.10506862.
6
Perylene attached to DNA through stiff or flexible linker: duplex stability and FRET.通过刚性或柔性连接子连接到DNA的苝:双链稳定性和荧光共振能量转移
Nucleosides Nucleotides Nucleic Acids. 2005;24(5-7):931-4. doi: 10.1081/ncn-200059283.
7
The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart.迪克森-德鲁十二聚体的碳环类似物的溶液构象:与它自身的X射线结构以及天然对应物的核磁共振结构的比较。
J Biomol Struct Dyn. 1998 Dec;16(3):547-68. doi: 10.1080/07391102.1998.10508269.
8
Oxetane locked thymidine in the Dickerson-Drew dodecamer causes local base pairing distortions -- an NMR structure and hydration study.迪克森-德鲁十二聚体中氧杂环丁烷锁定的胸苷会导致局部碱基配对扭曲——一项核磁共振结构与水合作用研究。
J Biomol Struct Dyn. 2005 Dec;23(3):299-330. doi: 10.1080/07391102.2005.10507067.
9
Nucleosides and nucleotides. 218. Alternate-strand triple-helix formation by the 3'-3'-linked oligodeoxynucleotides using a purine motif.核苷与核苷酸。218. 使用嘌呤基序的3'-3'-连接的寡脱氧核苷酸形成反链三螺旋。
Bioconjug Chem. 2003 May-Jun;14(3):607-13. doi: 10.1021/bc0256493.
10
The effect of two antipodal fluorine-induced sugar puckers on the conformation and stability of the Dickerson-Drew dodecamer duplex [d(CGCGAATTCGCG)]2.两种对映体氟诱导的糖环构象对Dickerson-Drew十二聚体双链体[d(CGCGAATTCGCG)]2的构象和稳定性的影响。
Nucleic Acids Res. 1998 May 1;26(9):2237-44. doi: 10.1093/nar/26.9.2237.

引用本文的文献

1
Coupling between conformational dynamics and catalytic function at the active site of the lead-dependent ribozyme.在依赖铅的核酶的活性位点处构象动力学和催化功能之间的偶联。
RNA. 2018 Nov;24(11):1542-1554. doi: 10.1261/rna.067579.118. Epub 2018 Aug 15.
2
The conformationally constrained N-methanocarba-dT analogue adopts an unexpected C4'-exo sugar pucker in the structure of a DNA hairpin.构象受限的 N-甲撑基-dT 类似物在 DNA 发夹结构中呈现出一种出人意料的 C4'-外式糖环构象。
Biochemistry. 2012 Apr 3;51(13):2639-41. doi: 10.1021/bi300215k. Epub 2012 Mar 20.
3
Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer.
构象刚性核苷探针有助于理解糖环构象和碱基取向在凝血酶结合适体中的作用。
Nucleic Acids Res. 2009 Sep;37(17):5589-601. doi: 10.1093/nar/gkp598. Epub 2009 Jul 20.
4
Biophysical studies of DNA modified with conformationally constrained nucleotides: comparison of 2'-exo (north) and 3'-exo (south) 'locked' templates.用构象受限核苷酸修饰的DNA的生物物理研究:2'-外向(北)和3'-外向(南)“锁定”模板的比较
Nucleic Acids Res. 2007;35(6):1978-91. doi: 10.1093/nar/gkm025. Epub 2007 Mar 6.
5
DNA bending induced by carbocyclic sugar analogs constrained to the north conformation.被限制在北构象的碳环糖类似物诱导的DNA弯曲。
Biopolymers. 2007;85(5-6):438-49. doi: 10.1002/bip.20673.