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利用自然发生的DNA变异和分子谱分析数据来剖析疾病和药物反应特征。

Exploiting naturally occurring DNA variation and molecular profiling data to dissect disease and drug response traits.

作者信息

Schadt Eric E

机构信息

Rosetta Inpharmatics, LLC, Seattle, Washington 98109, USA.

出版信息

Curr Opin Biotechnol. 2005 Dec;16(6):647-54. doi: 10.1016/j.copbio.2005.10.005. Epub 2005 Oct 24.

Abstract

Identifying the key drivers of common human diseases and associated signaling pathways remains one of the primary objectives in the biomedical and life sciences. In this respect, common inbred strains of mice have played a crucial role, and recent advances in the development of genomics and bioinformatics tools have significantly enhanced their utility for this purpose. These advances have enabled a more holistic, network-oriented view of biological systems that facilitates elucidation of the underlying causes of disease and the best ways to target them. Success in reconstructing gene networks underlying disease traits (or other complex traits like drug response) and identifying the key drivers of these traits now largely rests on integrative approaches that combine data from multiple different sources. Such integrative genomics approaches that take into account genotypic, molecular profiling and clinical data in segregating mouse populations have recently been developed. Key to this integration has been the development and application of sophisticated algorithms to mine the diversity of data.

摘要

确定常见人类疾病的关键驱动因素以及相关信号通路仍然是生物医学和生命科学的主要目标之一。在这方面,常见的近交系小鼠发挥了关键作用,并且基因组学和生物信息学工具开发方面的最新进展显著提高了它们在此目的上的效用。这些进展使人们能够对生物系统有更全面、以网络为导向的看法,这有助于阐明疾病的根本原因以及针对这些原因的最佳方法。重建疾病性状(或其他复杂性状,如药物反应)背后的基因网络并确定这些性状的关键驱动因素的成功,现在很大程度上依赖于整合来自多个不同来源数据的综合方法。最近已经开发出了这种在分离的小鼠群体中考虑基因型、分子谱分析和临床数据的综合基因组学方法。这种整合的关键在于开发和应用复杂算法来挖掘数据的多样性。

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