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[SSRHunter:一种用于SSR位点的本地搜索软件的开发]

[SSRHunter: development of a local searching software for SSR sites].

作者信息

Li Qiang, Wan Jian-Min

机构信息

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricutural University, Plant Gene Engineering Center of Jiangsu Province, Nanjing 210095, China.

出版信息

Yi Chuan. 2005 Sep;27(5):808-10.

Abstract

Progress in genome research has made it possible to develop new SSR markers by bioinformatics in a relatively narrow region of genome. To realize it, the first thing is to search for potential SSR sites. Any known methods have more or less defects. Efforts were made to develop a local SSR sites searching software in this study. The resultant software, SSRHunter, could accomplish this task perfectly. Furthermore, SSRHunter could provide automatic pretreatment of sequences, routine arrangement of sequences, sequence transformation and convenient report output.

摘要

基因组研究的进展使得通过生物信息学在相对狭窄的基因组区域开发新的SSR标记成为可能。要实现这一点,首先要搜索潜在的SSR位点。任何已知方法都或多或少存在缺陷。本研究致力于开发一款本地SSR位点搜索软件。所得软件SSRHunter能够完美完成这项任务。此外,SSRHunter还能提供序列的自动预处理、序列的常规排列、序列转换以及便捷的报告输出。

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