Suppr超能文献

光学阱中轴向力和位移的检测。

Detection of forces and displacements along the axial direction in an optical trap.

作者信息

Deufel Christopher, Wang Michelle D

机构信息

Cornell University, Department of Physics, Laboratory of Atomic and Solid State Physics, Ithaca, New York 14853, USA.

出版信息

Biophys J. 2006 Jan 15;90(2):657-67. doi: 10.1529/biophysj.105.065458. Epub 2005 Oct 28.

Abstract

We present measurements of the forces on, and displacements of, an optically trapped bead along the propagation direction of the trapping laser beam (the axial direction). In a typical experimental configuration, the bead is trapped in an aqueous solution using an oil-immersion, high-numerical-aperture objective. This refractive index mismatch complicates axial calibrations due to both a shift of the trap center along the axial direction and spherical aberrations. In this work, a known DNA template was unzipped along the axial direction and its characteristic unzipping force-extension data were used to determine 1), the location of the trap center along the axial direction; 2), the axial displacement of the bead from the trap center; and 3), the axial force exerted on the bead. These axial calibrations were obtained for trap center locations up to approximately 4 microm into the aqueous solution and with axial bead displacements up to approximately 600 nm from the trap center. In particular, the axial trap stiffness decreased substantially when the trap was located further into the aqueous solution. This approach, together with conventional lateral calibrations, results in a more versatile optical trapping instrument that is accurately calibrated in all three dimensions.

摘要

我们展示了沿捕获激光束传播方向(轴向)对光学捕获微珠所受的力以及微珠位移的测量结果。在典型的实验配置中,使用油浸、高数值孔径物镜将微珠捕获在水溶液中。由于捕获中心沿轴向的偏移和球差,这种折射率失配使得轴向校准变得复杂。在这项工作中,一个已知的DNA模板沿轴向解开,其特征性的解链力-伸长数据被用于确定:1)捕获中心沿轴向的位置;2)微珠相对于捕获中心的轴向位移;3)施加在微珠上的轴向力。这些轴向校准是针对捕获中心在水溶液中深入至约4微米的位置以及微珠相对于捕获中心轴向位移达约600纳米的情况获得的。特别地,当捕获中心进一步深入水溶液时,轴向捕获刚度显著降低。这种方法与传统的横向校准相结合,形成了一种在所有三个维度上都经过精确校准的更通用的光学捕获仪器。

相似文献

1
Detection of forces and displacements along the axial direction in an optical trap.
Biophys J. 2006 Jan 15;90(2):657-67. doi: 10.1529/biophysj.105.065458. Epub 2005 Oct 28.
2
Axial optical trapping efficiency through a dielectric interface.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Dec;76(6 Pt 1):061917. doi: 10.1103/PhysRevE.76.061917. Epub 2007 Dec 28.
3
Quantitative measurements of force and displacement using an optical trap.
Biophys J. 1996 Apr;70(4):1813-22. doi: 10.1016/S0006-3495(96)79746-1.
4
Optimizing bead size reduces errors in force measurements in optical traps.
Opt Express. 2013 Jan 14;21(1):39-48. doi: 10.1364/OE.21.000039.
5
Optical Torque Calculations and Measurements for DNA Torsional Studies.
bioRxiv. 2024 Jun 1:2024.05.29.596477. doi: 10.1101/2024.05.29.596477.
6
Numerical analysis for transverse microbead trapping using 30 MHz focused ultrasound in ray acoustics regime.
Ultrasonics. 2014 Jan;54(1):11-9. doi: 10.1016/j.ultras.2013.06.002. Epub 2013 Jun 17.
7
Optical torque calculations and measurements for DNA torsional studies.
Biophys J. 2024 Sep 17;123(18):3080-3089. doi: 10.1016/j.bpj.2024.07.005. Epub 2024 Jul 3.
8
Three-dimensional high-resolution particle tracking for optical tweezers by forward scattered light.
Microsc Res Tech. 1999 Mar 1;44(5):378-86. doi: 10.1002/(SICI)1097-0029(19990301)44:5<378::AID-JEMT10>3.0.CO;2-Z.
9
An integrated laser trap/flow control video microscope for the study of single biomolecules.
Biophys J. 2000 Aug;79(2):1155-67. doi: 10.1016/S0006-3495(00)76369-7.
10
The effect of immersion oil in optical tweezers.
Opt Express. 2011 Aug 1;19(16):14794-800. doi: 10.1364/OE.19.014794.

引用本文的文献

1
Enhancing the applied force and range of axial optical tweezers.
Biophys Rep (N Y). 2025 Jun 16;5(3):100219. doi: 10.1016/j.bpr.2025.100219.
2
Tunable elliptical cylinders for rotational mechanical studies of single DNA molecules.
Sci Adv. 2024 Dec 13;10(50):eadr4519. doi: 10.1126/sciadv.adr4519.
3
Tunable Elliptical Cylinders for Rotational Mechanical Studies of Single DNA Molecules.
bioRxiv. 2024 Sep 27:2024.09.25.614944. doi: 10.1101/2024.09.25.614944.
4
Optical torque calculations and measurements for DNA torsional studies.
Biophys J. 2024 Sep 17;123(18):3080-3089. doi: 10.1016/j.bpj.2024.07.005. Epub 2024 Jul 3.
5
Optical tweezers in single-molecule biophysics.
Nat Rev Methods Primers. 2021;1. doi: 10.1038/s43586-021-00021-6. Epub 2021 Mar 25.
6
Torsional Stiffness of Extended and Plectonemic DNA.
Phys Rev Lett. 2021 Jul 9;127(2):028101. doi: 10.1103/PhysRevLett.127.028101.
7
Structured Back Focal Plane Interferometry (SBFPI).
Sci Rep. 2019 Dec 30;9(1):20273. doi: 10.1038/s41598-019-56199-z.
8
High Trap Stiffness Microcylinders for Nanophotonic Trapping.
ACS Appl Mater Interfaces. 2019 Jul 17;11(28):25074-25080. doi: 10.1021/acsami.9b10041. Epub 2019 Jul 5.
10
DNA looping mediates nucleosome transfer.
Nat Commun. 2016 Nov 3;7:13337. doi: 10.1038/ncomms13337.

本文引用的文献

1
Optical trapping.
Rev Sci Instrum. 2004 Sep;75(9):2787-809. doi: 10.1063/1.1785844.
2
Measurement of the effective focal shift in an optical trap.
Opt Lett. 2005 Jun 1;30(11):1318-20. doi: 10.1364/ol.30.001318.
3
A single-molecule technique to study sequence-dependent transcription pausing.
Biophys J. 2004 Dec;87(6):3945-53. doi: 10.1529/biophysj.104.044081. Epub 2004 Oct 1.
5
Improved axial position detection in optical tweezers measurements.
Appl Opt. 2004 Apr 1;43(10):1991-5. doi: 10.1364/ao.43.001991.
6
Forward and reverse motion of single RecBCD molecules on DNA.
Biophys J. 2004 Mar;86(3):1640-8. doi: 10.1016/S0006-3495(04)74232-0.
7
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution.
Nature. 2003 Dec 11;426(6967):684-7. doi: 10.1038/nature02191. Epub 2003 Nov 23.
8
Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.
Cell. 2003 Nov 14;115(4):437-47. doi: 10.1016/s0092-8674(03)00845-6.
9
Sequence-dependent pausing of single lambda exonuclease molecules.
Science. 2003 Sep 26;301(5641):1914-8. doi: 10.1126/science.1088047. Epub 2003 Aug 28.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验