• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于单个DNA分子旋转力学研究的可调谐椭圆圆柱体

Tunable elliptical cylinders for rotational mechanical studies of single DNA molecules.

作者信息

Hong Yifeng, Ye Fan, Gao Xiang, Inman James T, Wang Michelle D

机构信息

Department of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA.

Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853, USA.

出版信息

Sci Adv. 2024 Dec 13;10(50):eadr4519. doi: 10.1126/sciadv.adr4519.

DOI:10.1126/sciadv.adr4519
PMID:39671476
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11641005/
Abstract

The angular optical trap (AOT) is a powerful technique for measuring the DNA topology and rotational mechanics of fundamental biological processes. Realizing the full potential of the AOT requires rapid torsional control of these processes. However, existing AOT quartz cylinders are limited in their ability to meet the high rotation rate requirement while minimizing laser-induced photodamage. In this work, we present a trapping particle design to meet this challenge by creating small metamaterial elliptical cylinders with tunable trapping force and torque properties. The optical torque of these cylinders arises from their shape anisotropy, with their optical properties tuned via multilayered SiO and SiN deposition. We demonstrate that these cylinders can be rotated at about three times the rate of quartz cylinders without slippage while enhancing the torque measurement resolution during DNA torsional elasticity studies. This approach opens opportunities for previously inaccessible rotational studies of DNA processing.

摘要

角向光阱(AOT)是一种用于测量DNA拓扑结构和基本生物过程旋转力学的强大技术。要充分发挥AOT的潜力,需要对这些过程进行快速扭转控制。然而,现有的AOT石英圆柱体在满足高旋转速率要求同时将激光诱导的光损伤降至最低的能力方面存在局限性。在这项工作中,我们提出了一种捕获粒子设计,通过制造具有可调捕获力和扭矩特性的小型超材料椭圆圆柱体来应对这一挑战。这些圆柱体的光扭矩源于其形状各向异性,其光学特性通过多层SiO和SiN沉积进行调节。我们证明,在DNA扭转弹性研究中,这些圆柱体能够以大约石英圆柱体三倍的速率旋转而不发生滑动,同时提高扭矩测量分辨率。这种方法为以前无法进行的DNA加工旋转研究开辟了机会。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/a049b8f0055f/sciadv.adr4519-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/5ddfa1e8cd85/sciadv.adr4519-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/771b62594618/sciadv.adr4519-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/892aa9741bc8/sciadv.adr4519-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/28ac304e68da/sciadv.adr4519-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/a049b8f0055f/sciadv.adr4519-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/5ddfa1e8cd85/sciadv.adr4519-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/771b62594618/sciadv.adr4519-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/892aa9741bc8/sciadv.adr4519-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/28ac304e68da/sciadv.adr4519-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2c/11641005/a049b8f0055f/sciadv.adr4519-f5.jpg

相似文献

1
Tunable elliptical cylinders for rotational mechanical studies of single DNA molecules.用于单个DNA分子旋转力学研究的可调谐椭圆圆柱体
Sci Adv. 2024 Dec 13;10(50):eadr4519. doi: 10.1126/sciadv.adr4519.
2
Tunable Elliptical Cylinders for Rotational Mechanical Studies of Single DNA Molecules.用于单个DNA分子旋转力学研究的可调谐椭圆圆柱体
bioRxiv. 2024 Sep 27:2024.09.25.614944. doi: 10.1101/2024.09.25.614944.
3
Angular Optical Trapping to Directly Measure DNA Torsional Mechanics.角向光学捕获直接测量 DNA 扭转力学。
Methods Mol Biol. 2022;2478:37-73. doi: 10.1007/978-1-0716-2229-2_4.
4
Optical torque calculations and measurements for DNA torsional studies.光学扭矩计算和测量在 DNA 扭转研究中的应用。
Biophys J. 2024 Sep 17;123(18):3080-3089. doi: 10.1016/j.bpj.2024.07.005. Epub 2024 Jul 3.
5
Optical Torque Calculations and Measurements for DNA Torsional Studies.用于DNA扭转研究的光扭矩计算与测量
bioRxiv. 2024 Jun 1:2024.05.29.596477. doi: 10.1101/2024.05.29.596477.
6
Passive torque wrench and angular position detection using a single-beam optical trap.使用单光束光阱进行被动扭矩扳手和角位置检测。
Opt Lett. 2010 Sep 1;35(17):2949-51. doi: 10.1364/OL.35.002949.
7
Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection.用于角捕获的纳米制造石英圆柱体:DNA超螺旋扭矩检测。
Nat Methods. 2007 Mar;4(3):223-5. doi: 10.1038/nmeth1013. Epub 2007 Feb 25.
8
An optical apparatus for rotation and trapping.一种用于旋转和捕获的光学装置。
Methods Enzymol. 2010;475:377-404. doi: 10.1016/S0076-6879(10)75015-1.
9
Single-Molecule Angular Optical Trapping for Studying Transcription Under Torsion.用于研究扭转状态下转录的单分子角光学捕获
Methods Mol Biol. 2018;1805:301-332. doi: 10.1007/978-1-4939-8556-2_16.
10
Stretching short sequences of DNA with constant force axial optical tweezers.使用恒力轴向光镊拉伸短DNA序列。
J Vis Exp. 2011 Oct 13(56):e3405. doi: 10.3791/3405.

本文引用的文献

1
Optical torque calculations and measurements for DNA torsional studies.光学扭矩计算和测量在 DNA 扭转研究中的应用。
Biophys J. 2024 Sep 17;123(18):3080-3089. doi: 10.1016/j.bpj.2024.07.005. Epub 2024 Jul 3.
2
Mapping fast DNA polymerase exchange during replication.绘制复制过程中快速 DNA 聚合酶交换图谱。
Nat Commun. 2024 Jun 22;15(1):5328. doi: 10.1038/s41467-024-49612-3.
3
Joint Efforts of Replicative Helicase and SSB Ensure Inherent Replicative Tolerance of G-Quadruplex.解旋酶和单链结合蛋白的共同作用确保了 G-四链体的固有复制容错性。
Adv Sci (Weinh). 2024 Mar;11(9):e2307696. doi: 10.1002/advs.202307696. Epub 2023 Dec 21.
4
Near-Field GHz Rotation and Sensing with an Optically Levitated Nanodumbbell.利用光悬浮纳米哑铃实现近场千兆赫兹旋转与传感
Nano Lett. 2023 Nov 22;23(22):10157-10163. doi: 10.1021/acs.nanolett.3c02442. Epub 2023 Nov 1.
5
Chromatinization modulates topoisomerase II processivity.染色质化调节拓扑异构酶 II 的连续性。
Nat Commun. 2023 Oct 27;14(1):6844. doi: 10.1038/s41467-023-42600-z.
6
Electromagnetic Forces and Torques: From Dielectrophoresis to Optical Tweezers.电磁力与转矩:从介电泳到光镊
Chem Rev. 2023 Jan 31;123(4):1680-711. doi: 10.1021/acs.chemrev.2c00576.
7
Polarity of the CRISPR roadblock to transcription.CRISPR 转录阻断的极性。
Nat Struct Mol Biol. 2022 Dec;29(12):1217-1227. doi: 10.1038/s41594-022-00864-x. Epub 2022 Dec 5.
8
Angular Optical Trapping to Directly Measure DNA Torsional Mechanics.角向光学捕获直接测量 DNA 扭转力学。
Methods Mol Biol. 2022;2478:37-73. doi: 10.1007/978-1-0716-2229-2_4.
9
HELQ is a dual-function DSB repair enzyme modulated by RPA and RAD51.HELQ 是一种双功能 DSB 修复酶,受 RPA 和 RAD51 调控。
Nature. 2022 Jan;601(7892):268-273. doi: 10.1038/s41586-021-04261-0. Epub 2021 Dec 22.
10
Optical tweezers in single-molecule biophysics.单分子生物物理学中的光镊
Nat Rev Methods Primers. 2021;1. doi: 10.1038/s43586-021-00021-6. Epub 2021 Mar 25.