Breitling Rainer, Hoeller Daniela
Groningen Bioinformatics Centre, University of Groningen, Kerklaan 30, 9751 NN Haren, The Netherlands.
FEBS Lett. 2005 Nov 21;579(28):6289-94. doi: 10.1016/j.febslet.2005.10.034. Epub 2005 Nov 2.
Over the last decade, epidermal growth factor (EGF) signaling has been used repeatedly as a test-bed for pioneering computational systems biology. Recent breakthroughs in our molecular understanding of EGF signaling pose new challenges for mathematical modeling strategies. Three key areas emerge as particularly relevant: the pervasive importance of compartmentalization and endosomal trafficking; the complexity of signalosome complexes; and the regulatory influence of diffusion and spatiality. Each one of them demands a drastic change in current computational approaches. We discuss recent developments in the field that address these emerging aspects in a new generation of more realistic - and potential more useful - models of EGF signaling.
在过去十年中,表皮生长因子(EGF)信号通路一直被反复用作开创性计算系统生物学的试验平台。我们对EGF信号通路的分子理解方面的最新突破,对数学建模策略提出了新的挑战。有三个关键领域显得尤为重要:区室化和内体运输的普遍重要性;信号小体复合物的复杂性;以及扩散和空间性的调节影响。它们每一个都要求当前的计算方法发生巨大变革。我们讨论了该领域的最新进展,这些进展在新一代更现实且可能更有用的EGF信号通路模型中解决了这些新出现的问题。