Suppr超能文献

P位点密码子-反密码子螺旋的不稳定是由于tRNA在核糖体内移动到P/E杂交状态所致。

Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome.

作者信息

McGarry Kevin G, Walker Sarah E, Wang Huanyu, Fredrick Kurt

机构信息

Department of Microbiology, The Ohio State University, Columbus, Ohio 43210, USA.

出版信息

Mol Cell. 2005 Nov 23;20(4):613-22. doi: 10.1016/j.molcel.2005.10.007.

Abstract

Retention of the reading frame in ribosomal complexes after single-round translocation depends on the acylation state of the tRNA. When tRNA lacking a peptidyl group is translocated to the P site, the mRNA slips to allow re-pairing of the tRNA with a nearby out-of-frame codon. Here, we show that this ribosomal activity results from movement of tRNA into the P/E hybrid state. Slippage of mRNA is suppressed by 3' truncation of the translocated tRNA, increased MgCl2 concentration, and mutation C2394A of the 50S E site, and each of these conditions inhibits P/E-state formation. Mutation G2252U of the 50S P site stimulates mRNA slippage, suggesting that decreased affinity of tRNA for the P/P state also destabilizes mRNA in the complex. The effects of G2252U are suppressed by C2394A, further implicating the P/E state in mRNA destabilization. This work uncovers a functional attribute of the P/E state crucial for understanding translation.

摘要

单轮转位后核糖体复合物中阅读框的保留取决于tRNA的酰化状态。当缺乏肽基的tRNA转位到P位点时,mRNA会滑动,以使tRNA与附近的框外密码子重新配对。在此,我们表明这种核糖体活性是由tRNA移动到P/E杂合状态引起的。转位tRNA的3'端截短、MgCl2浓度增加以及50S E位点的C2394A突变会抑制mRNA的滑动,并且这些条件中的每一个都抑制P/E状态的形成。50S P位点的G2252U突变会刺激mRNA滑动,这表明tRNA对P/P状态的亲和力降低也会使复合物中的mRNA不稳定。C2394A抑制了G2252U的作用,进一步表明P/E状态与mRNA不稳定有关。这项工作揭示了P/E状态对于理解翻译至关重要的功能属性。

相似文献

2
Binding of misacylated tRNAs to the ribosomal A site.
RNA. 2005 Nov;11(11):1610-5. doi: 10.1261/rna.2130505.
3
Destabilization of codon-anticodon interaction in the ribosomal exit site.
J Mol Biol. 1987 Jul 5;196(1):137-48. doi: 10.1016/0022-2836(87)90516-x.
5
Aminoacyl-tRNA binding at the recognition site is the first step of the elongation cycle of protein synthesis.
Proc Natl Acad Sci U S A. 1977 May;74(5):1903-7. doi: 10.1073/pnas.74.5.1903.
6
Codon-anticodon interaction at the ribosomal E site.
J Biol Chem. 1986 Jul 15;261(20):9140-3.

引用本文的文献

1
Role of the sarcin-ricin loop of 23S rRNA in biogenesis of the 50S ribosomal subunit.
RNA. 2025 Mar 18;31(4):585-599. doi: 10.1261/rna.080335.124.
3
Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches.
J Biol Chem. 2023 Apr;299(4):104608. doi: 10.1016/j.jbc.2023.104608. Epub 2023 Mar 15.
4
Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches.
bioRxiv. 2023 Jan 29:2023.01.28.526049. doi: 10.1101/2023.01.28.526049.
5
Extending the Spacing between the Shine-Dalgarno Sequence and P-Site Codon Reduces the Rate of mRNA Translocation.
J Mol Biol. 2020 Jul 24;432(16):4612-4622. doi: 10.1016/j.jmb.2020.06.008. Epub 2020 Jun 13.
6
Roles of specific aminoglycoside-ribosome interactions in the inhibition of translation.
RNA. 2019 Feb;25(2):247-254. doi: 10.1261/rna.068460.118. Epub 2018 Nov 9.
7
IF2 and unique features of initiator tRNA help establish the translational reading frame.
RNA Biol. 2018;15(4-5):604-613. doi: 10.1080/15476286.2017.1379636. Epub 2017 Nov 13.
9
Multiple mechanisms of reinitiation on bicistronic calicivirus mRNAs.
Mol Cell. 2015 Mar 19;57(6):1059-1073. doi: 10.1016/j.molcel.2015.01.039.
10
Structural determinants of an internal ribosome entry site that direct translational reading frame selection.
Nucleic Acids Res. 2014 Aug;42(14):9366-82. doi: 10.1093/nar/gku622. Epub 2014 Jul 18.

本文引用的文献

1
Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.
Mol Cell. 2005 Jun 10;18(6):675-86. doi: 10.1016/j.molcel.2005.05.016.
2
Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol Cell. 2005 Jun 10;18(6):663-74. doi: 10.1016/j.molcel.2005.05.005.
3
Sequence of steps in ribosome recycling as defined by kinetic analysis.
Mol Cell. 2005 May 13;18(4):403-12. doi: 10.1016/j.molcel.2005.04.009.
5
tRNA dynamics on the ribosome during translation.
Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12893-8. doi: 10.1073/pnas.0403884101. Epub 2004 Aug 18.
7
Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.
Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8900-5. doi: 10.1073/pnas.0401904101. Epub 2004 Jun 3.
9
Decoding the genome: a modified view.
Nucleic Acids Res. 2004 Jan 9;32(1):223-38. doi: 10.1093/nar/gkh185. Print 2004.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验