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对编码小鼠U7小核RNA的基因进行的转录分析。

A transcriptional analysis of the gene encoding mouse U7 small nuclear RNA.

作者信息

Phillips S C, Turner P C

机构信息

Department of Biochemistry, University of Liverpool, UK.

出版信息

Gene. 1992 Jul 15;116(2):181-6. doi: 10.1016/0378-1119(92)90514-p.

DOI:10.1016/0378-1119(92)90514-p
PMID:1634116
Abstract

Expression of the U7 gene, encoding mouse U7 snRNA, following microinjection into Xenopus oocytes is both accurate and efficient, giving rise to mature U7 snRNA and a precursor with an 8-nucleotide (nt) 3' extension. The mouse U7 gene promoter, which is similar to that of the vertebrate major U genes comprising a DSE, a PSE and a 3' box, with the same spatial arrangement, is as efficient as the Xenopus U2 gene promoter in this assay. A deletion analysis of the mouse U7 gene identified sequences downstream from the 3' box, within the region (nt +74 to +196), which seem to have a negative regulatory effect upon the frequency of transcription initiation and are also required for accurate 3' end formation. Sequences in the nt -1699 to -431 region also seemed to have a negative effect on the level of transcription. In addition, sequences upstream from the PSE, within the nt -65 to -421 region, are necessary for accurate and efficient synthesis of mature U7 snRNA. Finally, the mouse U7 snRNA may not form a functional snRNP in Xenopus oocytes due to defective snRNP assembly and/or nuclear import.

摘要

编码小鼠U7 snRNA的U7基因在显微注射到非洲爪蟾卵母细胞后,其表达既准确又高效,可产生成熟的U7 snRNA和一个具有8个核苷酸(nt)3'延伸的前体。小鼠U7基因启动子与脊椎动物主要U基因的启动子相似,包含一个DSE、一个PSE和一个3'框,具有相同的空间排列,在该实验中与非洲爪蟾U2基因启动子效率相当。对小鼠U7基因的缺失分析确定了3'框下游、区域(nt +74至+196)内的序列,这些序列似乎对转录起始频率有负调控作用,并且对于准确的3'末端形成也是必需的。nt -1699至-431区域的序列似乎也对转录水平有负面影响。此外,PSE上游、nt -65至-421区域内的序列对于成熟U7 snRNA的准确高效合成是必需的。最后,由于snRNP组装和/或核输入存在缺陷,小鼠U7 snRNA可能无法在非洲爪蟾卵母细胞中形成功能性snRNP。

相似文献

1
A transcriptional analysis of the gene encoding mouse U7 small nuclear RNA.对编码小鼠U7小核RNA的基因进行的转录分析。
Gene. 1992 Jul 15;116(2):181-6. doi: 10.1016/0378-1119(92)90514-p.
2
The Xenopus U7 snRNA-encoding gene has an unusually compact structure.非洲爪蟾U7小核RNA编码基因具有异常紧密的结构。
Gene. 1992 Oct 21;120(2):271-6. doi: 10.1016/0378-1119(92)90104-w.
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Sequence and expression of a mouse U7 snRNA type II pseudogene.小鼠U7 snRNA II型假基因的序列与表达
DNA Seq. 1991;1(6):401-4. doi: 10.3109/10425179109020796.
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Cloning and characterization of the Drosophila U7 small nuclear RNA.果蝇U7小核RNA的克隆与特性分析
Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9422-7. doi: 10.1073/pnas.1533509100. Epub 2003 Jul 18.
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Functional analysis of the sea urchin U7 small nuclear RNA.海胆U7小核RNA的功能分析
Mol Cell Biol. 1988 Mar;8(3):1076-84. doi: 10.1128/mcb.8.3.1076-1084.1988.
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Assembly, nuclear import and function of U7 snRNPs studied by microinjection of synthetic U7 RNA into Xenopus oocytes.通过将合成的U7 RNA显微注射到非洲爪蟾卵母细胞中来研究U7小核核糖核蛋白颗粒的组装、核输入及功能。
Nucleic Acids Res. 1995 Aug 25;23(16):3141-51. doi: 10.1093/nar/23.16.3141.
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In vivo assembly of functional U7 snRNP requires RNA backbone flexibility within the Sm-binding site.功能性U7小核核糖核蛋白颗粒(snRNP)的体内组装需要Sm结合位点内的RNA主链具有灵活性。
Nat Struct Mol Biol. 2006 Apr;13(4):347-53. doi: 10.1038/nsmb1075. Epub 2006 Mar 19.
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3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA.小鼠组蛋白前体mRNA的3'末端加工:U7小核仁RNA与前体mRNA之间存在额外碱基配对的证据
Nucleic Acids Res. 1994 Oct 11;22(20):4023-30. doi: 10.1093/nar/22.20.4023.
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The Xenopus U2 gene PSE is a single, compact, element required for transcription initiation and 3' end formation.非洲爪蟾U2基因的近端序列元件(PSE)是一个单一、紧凑的元件,是转录起始和3'端形成所必需的。
Nucleic Acids Res. 1989 May 25;17(10):3633-44. doi: 10.1093/nar/17.10.3633.
10
Genetic complementation in the Xenopus oocyte: co-expression of sea urchin histone and U7 RNAs restores 3' processing of H3 pre-mRNA in the oocyte.非洲爪蟾卵母细胞中的基因互补:海胆组蛋白与U7 RNA的共表达可恢复卵母细胞中H3前体mRNA的3'加工。
EMBO J. 1986 Jul;5(7):1675-82. doi: 10.1002/j.1460-2075.1986.tb04411.x.

引用本文的文献

1
The Cellular Processing Capacity Limits the Amounts of Chimeric U7 snRNA Available for Antisense Delivery.细胞处理能力限制了可用于反义递送的嵌合 U7 snRNA 的数量。
Mol Ther Nucleic Acids. 2012 Jun 26;1(6):e31. doi: 10.1038/mtna.2012.24.
2
U7 snRNAs: a computational survey.U7小核RNA:一项计算研究
Genomics Proteomics Bioinformatics. 2007 Dec;5(3-4):187-95. doi: 10.1016/S1672-0229(08)60006-6.
3
Common factors direct transcription through the proximal sequence elements (PSEs) of the embryonic sea urchin U1, U2, and U6 genes despite minimal similarity among the PSEs.
尽管近端序列元件(PSEs)之间相似度极低,但常见因子可通过胚胎海胆U1、U2和U6基因的近端序列元件指导转录。
Mol Cell Biol. 1996 Mar;16(3):1275-81. doi: 10.1128/MCB.16.3.1275.
4
The low abundance of U7 snRNA is partly determined by its Sm binding site.U7小核RNA的低丰度部分由其Sm结合位点决定。
EMBO J. 1993 Mar;12(3):1229-38. doi: 10.1002/j.1460-2075.1993.tb05764.x.