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人鸟苷单磷酸还原酶2(GMPR2)与鸟苷单磷酸(GMP)复合物的晶体结构

Crystal structure of human guanosine monophosphate reductase 2 (GMPR2) in complex with GMP.

作者信息

Li Jixi, Wei Zhiyi, Zheng Mei, Gu Xing, Deng Yingfeng, Qiu Rui, Chen Fei, Ji Chaoneng, Gong Weimin, Xie Yi, Mao Yumin

机构信息

State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai 200433, People's Republic of China.

出版信息

J Mol Biol. 2006 Feb 3;355(5):980-8. doi: 10.1016/j.jmb.2005.11.047. Epub 2005 Dec 1.

Abstract

Guanosine monophosphate reductase (GMPR) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP to IMP, and plays a critical role in re-utilization of free intracellular bases and purine nucleosides. Here, we report the first crystal structure of human GMP reductase 2 (hGMPR2) in complex with GMP at 3.0 A resolution. The protein forms a tetramer composed of subunits adopting the ubiquitous (alpha/beta)8 barrel fold. Interestingly, the substrate GMP is bound to hGMPR2 through interactions with Met269, Ser270, Arg286, Ser288, and Gly290; this makes the conformation of the adjacent flexible binding region (residues 268-289) fixed, much like a door on a hinge. Structure comparison and sequence alignment analyses show that the conformation of the active site loop (residues 179-187) is similar to those of hGMPR1 and inosine monophosphate dehydrogenases (IMPDHs). We propose that Cys186 is the potential active site, and that the conformation of the loop (residues 129-133) suggests a preference for the coenzyme NADPH over NADH. This structure provides important information towards understanding the functions of members of the GMPR family.

摘要

鸟苷单磷酸还原酶(GMPR)催化GMP不可逆地且依赖于NADPH的还原脱氨反应生成IMP,并在游离细胞内碱基和嘌呤核苷的再利用中发挥关键作用。在此,我们报道了人GMP还原酶2(hGMPR2)与GMP复合物的首个晶体结构,分辨率为3.0埃。该蛋白质形成由亚基组成的四聚体,亚基采用普遍存在的(α/β)8桶状折叠。有趣的是,底物GMP通过与Met269、Ser270、Arg286、Ser288和Gly290相互作用而与hGMPR2结合;这使得相邻的柔性结合区域(第268 - 289位残基)的构象固定,就像铰链上的门一样。结构比较和序列比对分析表明,活性位点环(第179 - 187位残基)的构象与hGMPR1和肌苷单磷酸脱氢酶(IMPDHs)的相似。我们提出Cys186是潜在的活性位点,并且环(第129 - 133位残基)的构象表明对辅酶NADPH的偏好超过NADH。该结构为理解GMPR家族成员的功能提供了重要信息。

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