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高分辨率场循环31P NMR弛豫测量法探测鸟苷单磷酸还原酶上的底物和辅因子动力学

Substrate and Cofactor Dynamics on Guanosine Monophosphate Reductase Probed by High Resolution Field Cycling 31P NMR Relaxometry.

作者信息

Rosenberg Masha M, Redfield Alfred G, Roberts Mary F, Hedstrom Lizbeth

机构信息

From the Departments of Biology.

Biochemistry, and.

出版信息

J Biol Chem. 2016 Oct 28;291(44):22988-22998. doi: 10.1074/jbc.M116.739516. Epub 2016 Sep 9.

Abstract

Guanosine-5'-monophosphate reductase (GMPR) catalyzes the reduction of GMP to IMP and ammonia with concomitant oxidation of NADPH. Here we investigated the structure and dynamics of enzyme-bound substrates and cofactors by measuring P relaxation rates over a large magnetic field range using high resolution field cycling NMR relaxometry. Surprisingly, these experiments reveal differences in the low field relaxation profiles for the monophosphate of GMP compared with IMP in their respective NADP complexes. These complexes undergo partial reactions that mimic different steps in the overall catalytic cycle. The relaxation profiles indicate that the substrate monophosphates have distinct interactions in E·IMP·NADP and E·GMP·NADP complexes. These findings were not anticipated by x-ray crystal structures, which show identical interactions for the monophosphates of GMP and IMP in several inert complexes. In addition, the motion of the cofactor is enhanced in the E·GMP·NADP complex. Last, the motions of the substrate and cofactor are coordinately regulated; the cofactor has faster local motions than GMP in the deamination complex but is more constrained than IMP in that complex, leading to hydride transfer. These results show that field cycling can be used to investigate the dynamics of protein-bound ligands and provide new insights into how portions of the substrate remote from the site of chemical transformation promote catalysis.

摘要

鸟苷-5'-单磷酸还原酶(GMPR)催化GMP还原为IMP和氨,并伴随NADPH的氧化。在这里,我们使用高分辨率场循环核磁共振弛豫测量法,在较大的磁场范围内测量磷的弛豫速率,从而研究了酶结合底物和辅因子的结构与动力学。令人惊讶的是,这些实验揭示了在各自的NADP复合物中,GMP的单磷酸与IMP相比,在低场弛豫谱上存在差异。这些复合物经历了模拟整个催化循环中不同步骤的部分反应。弛豫谱表明底物单磷酸在E·IMP·NADP和E·GMP·NADP复合物中有不同的相互作用。这些发现是X射线晶体结构所未预料到的,X射线晶体结构显示在几种惰性复合物中,GMP和IMP的单磷酸具有相同的相互作用。此外,在E·GMP·NADP复合物中,辅因子的运动增强。最后,底物和辅因子的运动受到协同调节;在脱氨复合物中,辅因子的局部运动比GMP快,但比该复合物中的IMP更受限制,从而导致氢化物转移。这些结果表明,场循环可用于研究蛋白质结合配体的动力学,并为远离化学转化位点的底物部分如何促进催化作用提供新的见解。

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