Inaba Kenji, Takahashi Yoh-hei, Ito Koreaki, Hayashi Shigehiko
Institute for Virus Research, Kyoto University and Core Research for Evolutional Science and Technology, Japan Science and Technology Agency, Kyoto 606-8507, Japan.
Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):287-92. doi: 10.1073/pnas.0507570103. Epub 2005 Dec 29.
Recent studies have revealed numerous examples in which oxidation and reduction of cysteines in proteins are integrated into specific cascades of biological regulatory systems. In general, these reactions proceed as thiol-disulfide exchange events. However, it is not exactly understood how a disulfide bond is created de novo. DsbB, an Escherichia coli plasma membrane protein, is one of the enzymes that create a new disulfide bond within itself and in DsbA, the direct catalyst of protein disulfide bond formation in the periplasmic space. DsbB is associated with a cofactor, either ubiquinone or menaquinone, as a source of an oxidizing equivalent. The DsbB-bound quinone undergoes transition to a pink (lambdamax, approximately 500 nm, ubiquinone) or violet (lambdamax, approximately 550 nm, menaquinone)-colored state during the course of the DsbB enzymatic reaction. Here we show that not only the thiolate form of Cys-44 previously suggested but also Arg-48 in the alpha-helical arrangement is essential for the quinone transition. Quantum chemical simulations indicate that proper positioning of thiolate anion and ubiquinone in conjunction with positively charged guanidinium moiety of arginine allows the formation of a thiolate-ubiquinone charge transfer complex with absorption peaks at approximately 500 nm as well as a cysteinylquinone covalent adduct. We propose that the charge transfer state leads to the transition state adduct that accepts a nucleophilic attack from another cysteine to generate a disulfide bond de novo. A similar mechanism is conceivable for a class of eukaryotic dithiol oxidases having a FAD cofactor.
最近的研究揭示了许多实例,其中蛋白质中半胱氨酸的氧化和还原被整合到生物调节系统的特定级联反应中。一般来说,这些反应以硫醇-二硫键交换事件的形式进行。然而,二硫键是如何从头形成的尚不完全清楚。DsbB是一种大肠杆菌质膜蛋白,是在其自身以及周质空间中蛋白质二硫键形成的直接催化剂DsbA中形成新二硫键的酶之一。DsbB与作为氧化当量来源的辅因子泛醌或甲萘醌相关联。在DsbB酶促反应过程中,与DsbB结合的醌会转变为粉红色(最大吸收波长,约500nm,泛醌)或紫色(最大吸收波长,约550nm,甲萘醌)状态。在这里我们表明,不仅先前提出的Cys-44的硫醇盐形式,而且α-螺旋排列中的Arg-48对于醌的转变也是必不可少的。量子化学模拟表明,硫醇盐阴离子和泛醌与精氨酸带正电荷的胍基部分的适当定位允许形成具有约500nm吸收峰的硫醇盐-泛醌电荷转移复合物以及半胱氨酰醌共价加合物。我们提出电荷转移状态导致过渡态加合物,该加合物接受来自另一个半胱氨酸的亲核攻击以从头生成二硫键。对于一类具有FAD辅因子的真核二硫醇氧化酶,类似的机制是可以想象的。