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酵母质粒分配基因座 STB 的功能分析。

Functional analysis of the yeast plasmid partition locus STB.

机构信息

European Molecular Biology Laboratory, Postfach 10.2209, 6900 Heidelberg, FRG.

出版信息

EMBO J. 1986 Dec 1;5(12):3391-9. doi: 10.1002/j.1460-2075.1986.tb04655.x.

DOI:10.1002/j.1460-2075.1986.tb04655.x
PMID:16453734
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1167338/
Abstract

Derivatives of the yeast 2mu plasmid with the cis-acting locus STB (also called REP3) are stably maintained if two plasmid-encoded proteins are present in trans. There are conflicting reports of both the extent of STB and its possible involvement in plasmid partition or copy number control. We have resolved the controversy by constructing 2micro derivatives with a conditional STB function, and showing that when STB is inactivated plasmids become concentrated in a small fraction of the population although the total number of plasmids remains unaltered. Moreover we show that STB consists of two functionally distinct domains which we call STB-proximal and STB-distal relative to the origin of replication. Although STB-proximal is sufficient for proper partitioning, this function is severely disrupted by active transcription from neighbouring sequences. STB-distal is important to protect STB-proximal and ORI from such transcription, and can be effeciently replaced by a 94-bp terminator fragment in an orientation-dependent manner. We find that STB-distal contains an additional element which depresses transcription from upstream promoters. We also describe the phenomenon of replicaton inhibition which we believe can exlain the anomalous instability of some yeast plasmids.

摘要

酵母 2μ 质粒的衍生物,如果存在两个质粒编码的蛋白质在顺式作用,就可以稳定地维持。关于 STB(也称为 REP3)的作用范围及其在质粒分配或拷贝数控制中的可能作用存在相互矛盾的报道。我们通过构建具有条件 STB 功能的 2μ 衍生物,解决了这一争议,并表明当 STB 失活时,质粒集中在种群的一小部分中,尽管质粒总数保持不变。此外,我们还表明,STB 由两个功能不同的结构域组成,相对于复制起点,我们称之为 STB 近端和 STB 远端。虽然 STB 近端足以进行适当的分配,但来自邻近序列的活跃转录会严重破坏这种功能。STB 远端对于保护 STB 近端和 ORI 免受这种转录至关重要,并且可以通过以依赖取向的方式有效地被一个 94 碱基对的终止子片段替换。我们发现 STB 远端包含一个额外的元件,它抑制了来自上游启动子的转录。我们还描述了复制抑制现象,我们认为这种现象可以解释某些酵母质粒的异常不稳定性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/3bd9a16c8528/emboj00175-0322-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/9b51fb1db76e/emboj00175-0320-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/24958178680b/emboj00175-0321-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/9e97808d8bd0/emboj00175-0321-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/3bd9a16c8528/emboj00175-0322-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/9b51fb1db76e/emboj00175-0320-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/24958178680b/emboj00175-0321-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/9e97808d8bd0/emboj00175-0321-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ff5/1167338/3bd9a16c8528/emboj00175-0322-a.jpg

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本文引用的文献

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Cloning and analysis of strong promoters is made possible by the downstream placement of a RNA termination signal.通过在下游放置RNA终止信号,使得强启动子的克隆和分析成为可能。
Proc Natl Acad Sci U S A. 1981 Aug;78(8):4936-40. doi: 10.1073/pnas.78.8.4936.
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The yeast plasmid 2mu circle encodes components required for its high copy propagation.酵母质粒2μm环编码其高拷贝复制所需的组分。
Cell. 1983 Aug;34(1):95-104. doi: 10.1016/0092-8674(83)90139-3.
3
Identification of a suppressor sequence for DNA replication in the replication origin region of the Bacillus subtilis chromosome.
自私酵母质粒利用着丝粒凝聚复合物和凝聚染色质实现忠实分配。
PLoS Genet. 2021 Jul 16;17(7):e1009660. doi: 10.1371/journal.pgen.1009660. eCollection 2021 Jul.
4
Harnessing the Endogenous 2μ Plasmid of for Pathway Construction.利用酿酒酵母的内源性2μm质粒进行途径构建。 (注:原文中“of”后面缺少具体内容,根据常见语境推测补充了“酿酒酵母”,你可根据实际情况调整)
Front Microbiol. 2021 Jun 18;12:679665. doi: 10.3389/fmicb.2021.679665. eCollection 2021.
5
A Flp-SUMO hybrid recombinase reveals multi-layered copy number control of a selfish DNA element through post-translational modification.Flp-SUMO 杂合重组酶通过翻译后修饰揭示了自私 DNA 元件的多层次拷贝数控制。
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Pervasive transcription fine-tunes replication origin activity.普遍转录精细调节复制原点活性。
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