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RSC复合物对DNA扭曲的直接观察。

Direct observation of DNA distortion by the RSC complex.

作者信息

Lia Giuseppe, Praly Elise, Ferreira Helder, Stockdale Chris, Tse-Dinh Yuk Ching, Dunlap David, Croquette Vincent, Bensimon David, Owen-Hughes Tom

机构信息

Laboratoire de Physique Statistique and Department Biologie, Ecole Normale Supérieure, CNRS-UMR 8550, 24 rue Lhomond, 75231 Paris Cedex 05, France.

出版信息

Mol Cell. 2006 Feb 3;21(3):417-25. doi: 10.1016/j.molcel.2005.12.013.

DOI:10.1016/j.molcel.2005.12.013
PMID:16455496
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3443744/
Abstract

The Snf2 family represents a functionally diverse class of ATPase sharing the ability to modify DNA structure. Here, we use a magnetic trap and an atomic force microscope to monitor the activity of a member of this class: the RSC complex. This enzyme caused transient shortenings in DNA length involving translocation of typically 400 bp within 2 s, resulting in the formation of a loop whose size depended on both the force applied to the DNA and the ATP concentration. The majority of loops then decrease in size within a time similar to that with which they are formed, suggesting that the motor has the ability to reverse its direction. Loop formation was also associated with the generation of negative DNA supercoils. These observations support the idea that the ATPase motors of the Snf2 family of proteins act as DNA translocases specialized to generate transient distortions in DNA structure.

摘要

Snf2家族代表了一类功能多样的ATP酶,它们具有改变DNA结构的能力。在这里,我们使用磁镊和原子力显微镜来监测该家族一个成员的活性:RSC复合物。这种酶会导致DNA长度的短暂缩短,通常在2秒内移动400碱基对,从而形成一个环,其大小取决于施加在DNA上的力和ATP浓度。然后,大多数环在形成后的一段时间内尺寸减小,这表明该分子马达有能力反转其方向。环的形成还与负DNA超螺旋的产生有关。这些观察结果支持了这样一种观点,即Snf2家族蛋白质的ATP酶分子马达作为DNA转位酶,专门用于在DNA结构中产生短暂的扭曲。

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本文引用的文献

1
Analysis of DNA supercoil induction by FtsK indicates translocation without groove-tracking.FtsK对DNA超螺旋诱导的分析表明其易位过程中不存在沟追踪现象。
Nat Struct Mol Biol. 2005 May;12(5):436-40. doi: 10.1038/nsmb926. Epub 2005 Apr 10.
2
The CSB protein actively wraps DNA.CSB蛋白能主动包裹DNA。
J Biol Chem. 2005 Feb 11;280(6):4722-9. doi: 10.1074/jbc.M409147200. Epub 2004 Nov 16.
3
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.利用I型限制修饰酶EcoR124I对DNA易位进行实时观察。
Nat Struct Mol Biol. 2004 Sep;11(9):838-43. doi: 10.1038/nsmb816. Epub 2004 Aug 8.
4
Single-molecule study of RuvAB-mediated Holliday-junction migration.RuvAB介导的霍利迪连接体迁移的单分子研究
Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11611-6. doi: 10.1073/pnas.0404369101. Epub 2004 Aug 3.
5
Fast, DNA-sequence independent translocation by FtsK in a single-molecule experiment.在单分子实验中,FtsK介导的快速、不依赖DNA序列的易位。
EMBO J. 2004 Jun 16;23(12):2430-9. doi: 10.1038/sj.emboj.7600242. Epub 2004 May 27.
6
Single-molecule assay reveals strand switching and enhanced processivity of UvrD.单分子检测揭示了UvrD的链交换和增强的持续合成能力。
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6439-44. doi: 10.1073/pnas.0306713101. Epub 2004 Apr 12.
7
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9
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J Biol Chem. 2003 Mar 14;278(11):9212-8. doi: 10.1074/jbc.M211545200. Epub 2003 Jan 3.