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一种由CCA添加酶进行C74添加的模型:与C75和A76添加一样,C74添加不涉及tRNA易位。

A model for C74 addition by CCA-adding enzymes: C74 addition, like C75 and A76 addition, does not involve tRNA translocation.

作者信息

Cho Hyundae D, Chen Yu, Varani Gabriele, Weiner Alan M

机构信息

Department of Biochemistry, School of Medicine, University of Washington, Seattle, Washington 98195-7350, USA.

出版信息

J Biol Chem. 2006 Apr 7;281(14):9801-11. doi: 10.1074/jbc.M512603200. Epub 2006 Feb 1.

Abstract

The CCA-adding enzyme adds CCA to the 3'-end of tRNA one nucleotide at a time, using CTP and ATP as substrates. We found previously that tRNA does not rotate or translocate on the enzyme during the addition of C75 and A76. We therefore predicted that the growing 3'-end of tRNA must, upon addition of each nucleotide, refold to reposition the new 3'-hydroxyl equivalently relative to the solitary nucleotidyltransferase motif. Cocrystal structures of the class I archaeal Archaeoglobus fulgidus enzyme, poised for addition of C75 and A76, confirmed this prediction. We have also demonstrated that an evolutionarily flexible beta-turn facilitates progressive refolding of the 3'-terminal C74 and C75 residues during C75 and A76 addition. Although useful cocrystals corresponding to C74 addition have not yet been obtained, we now show experimentally that tRNA does not rotate or translocate during C74 addition. We therefore propose, based on the existing A. fulgidus cocrystal structures, that the same flexible beta-turn functions as a wedge between the discriminator base (N73) and the terminal base pair of the acceptor stem, unstacking and repositioning N73 to attack the incoming CTP. Thus a single flexible beta-turn would orchestrate consecutive addition of all three nucleotides without significant movement of the tRNA on the enzyme surface.

摘要

CCA添加酶每次以CTP和ATP为底物,将一个核苷酸逐个添加到tRNA的3'末端。我们之前发现,在添加C75和A76的过程中,tRNA不会在该酶上旋转或移位。因此,我们预测,在添加每个核苷酸时,tRNA不断增长的3'末端必须重新折叠,以使新的3'-羟基相对于单独的核苷酸转移酶基序重新定位。嗜热栖热菌I类古菌酶添加C75和A76时的共晶体结构证实了这一预测。我们还证明,一个在进化上具有灵活性的β-转角在添加C75和A76的过程中促进了3'末端C74和C75残基的逐步重新折叠。虽然尚未获得与添加C74相对应的有用共晶体,但我们现在通过实验表明,在添加C74的过程中,tRNA不会旋转或移位。因此,基于现有的嗜热栖热菌共晶体结构,我们提出,同一个灵活的β-转角在鉴别碱基(N73)和接受茎的末端碱基对之间起到楔子的作用,使N73解堆叠并重新定位以攻击进入的CTP。因此,一个单一的灵活β-转角将协调所有三个核苷酸的连续添加,而tRNA在酶表面不会有明显移动。

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