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具有幂律摩擦核的克莱默斯模型:生化反应的离散动力学与动态无序

Kramers model with a power-law friction kernel: dispersed kinetics and dynamic disorder of biochemical reactions.

作者信息

Min Wei, Xie X Sunney

机构信息

Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1 Pt 1):010902. doi: 10.1103/PhysRevE.73.010902. Epub 2006 Jan 27.

Abstract

Kramers' model for the rate of chemical reaction is generalized to explain the phenomena of dispersed kinetics and dynamic disorder in biochemical reactions, by incorporating the newly observed power-law friction kernel into the generalized Langevin equation for a one-dimensional reaction ordinate. This new model accounts for time scale overlap between conformational and chemical dynamics, and quantitatively describes the multi-exponential kinetics and memory effects of fluctuating rate constants, which have been revealed by recent single-molecule experiments.

摘要

克莱默斯化学反应速率模型得到推广,通过将新观测到的幂律摩擦核纳入一维反应坐标的广义朗之万方程,来解释生化反应中的分散动力学和动态无序现象。这个新模型考虑了构象动力学和化学动力学之间的时间尺度重叠,并定量描述了波动速率常数的多指数动力学和记忆效应,这些效应已被最近的单分子实验所揭示。

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