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MhcOvar-DRB1基因分型的优化

Optimization of the MhcOvar-DRB1 gene typing.

作者信息

Arrieta-Aguirre I, García-Etxebarria K, Jugo B M

机构信息

Department of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country, Bilbao, Spain.

出版信息

Tissue Antigens. 2006 Mar;67(3):222-8. doi: 10.1111/j.1399-0039.2006.00556.x.

Abstract

The variability of the sheep major histocompatibility complex (MHC) class II DRB1 locus has been analyzed in this work. Exon 2 of Ovar-DRB1 was amplified by polymerase chain reaction (PCR) with the primers designed by Amills et al. for goats. In a total of 187 sheep of Latxa breed, we identified by PCR-single-strand conformation polymorphism (SSCP) 19 alleles, eight of them previously unpublished. Moreover, the observed heterozygosity reached 91-95%. A new allelic type named DRB*14 was defined, which brings to light once more the discussion as to the ancestor of the domestic sheep. Although all the defined alleles can be discriminated by PCR-SSCP, sequence-based typing is proposed as the technique of choice for sheep DRB1 gene typing.

摘要

本研究分析了绵羊主要组织相容性复合体(MHC)II类DRB1基因座的变异性。采用Amills等人针对山羊设计的引物,通过聚合酶链反应(PCR)扩增了Ovar-DRB1的第2外显子。在总共187只拉查羊中,我们通过PCR-单链构象多态性(SSCP)鉴定出19个等位基因,其中8个是此前未发表的。此外,观察到的杂合度达到91%-95%。定义了一种名为DRB*14的新等位基因类型,这再次引发了关于家绵羊祖先的讨论。尽管所有已定义的等位基因都可以通过PCR-SSCP进行区分,但建议将基于序列的分型作为绵羊DRB1基因分型的首选技术。

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