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用于增强蛋白质谱分析的线性飞行时间记录的重采样与反卷积

Resampling and deconvolution of linear time-of-flight records for enhanced protein profiling.

作者信息

Malyarenko Dariya I, Cooke William E, Tracy Eugene R, Drake Richard R, Shin Susanna, Semmes O John, Sasinowski Maciek, Manos Dennis M

机构信息

Departments of Physics and Applied Science, College of William and Mary, Williamsburg, VA 23187-8795, USA.

出版信息

Rapid Commun Mass Spectrom. 2006;20(11):1670-8. doi: 10.1002/rcm.2496.

DOI:10.1002/rcm.2496
PMID:16637003
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7432531/
Abstract

We have developed a peak deconvolution strategy that is applicable to the full mass range of a time-of-flight (TOF) spectrum. This strategy involves resampling a spectrum to create a time series that has equal peak widths (in time) across the entire spectrum, and then using the deconvolution filters we have previously described. We use this technique to deconvolve the protein mass spectra for blood serum and cell lysates acquired on three separate TOF instruments. Following deconvolution, we resolve spectral structures consistent with expected events such as multiply charged ions, matrix adducts and post-translational protein modifications. The deconvolution procedure produces a 40% improvement in the resolution and enhanced experimental sensitivity over the full length of the linear TOF record, up to m/z 150 000. This approach is particularly appropriate for automated data analysis and peak detection in dense TOF spectra.

摘要

我们已经开发出一种适用于飞行时间(TOF)质谱全质量范围的峰去卷积策略。该策略包括对光谱进行重新采样,以创建一个在整个光谱中具有相等峰宽(时间上)的时间序列,然后使用我们之前描述的去卷积滤波器。我们使用这种技术对在三台独立的TOF仪器上采集的血清和细胞裂解物的蛋白质质谱进行去卷积。去卷积后,我们解析出与预期事件(如多电荷离子、基质加合物和蛋白质翻译后修饰)一致的光谱结构。去卷积过程使分辨率提高了40%,并在线性TOF记录的全长范围内(高达m/z 150 000)增强了实验灵敏度。这种方法特别适用于密集TOF光谱中的自动数据分析和峰检测。

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本文引用的文献

1
Automated assignment of charge states from resolved isotopic peaks for multiply charged ions.解析同位素峰确定多电荷离子的电荷态自动分配。
J Am Soc Mass Spectrom. 1995 Jan;6(1):52-6. doi: 10.1016/1044-0305(94)00091-D.
2
Deconvolution filters to enhance resolution of dense time-of-flight survey spectra in the time-lag optimization range.用于在时间延迟优化范围内提高密集飞行时间测量光谱分辨率的反卷积滤波器。
Rapid Commun Mass Spectrom. 2006;20(11):1661-9. doi: 10.1002/rcm.2487.
3
Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.使用平均光谱进行生物医学应用中质谱的特征提取和定量分析。
Bioinformatics. 2005 May 1;21(9):1764-75. doi: 10.1093/bioinformatics/bti254. Epub 2005 Jan 26.
4
High throughput proteome screening for biomarker detection.用于生物标志物检测的高通量蛋白质组筛选。
Mol Cell Proteomics. 2005 Feb;4(2):182-90. doi: 10.1074/mcp.M400161-MCP200. Epub 2005 Jan 5.
5
Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility.表面增强激光解吸/电离飞行时间质谱法评估血清蛋白质谱用于前列腺癌检测:I. 平台重现性评估
Clin Chem. 2005 Jan;51(1):102-12. doi: 10.1373/clinchem.2004.038950.
6
Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization time-of-flight mass spectrometric records for serum peptides using time-series analysis techniques.使用时间序列分析技术提高血清肽表面增强激光解吸/电离飞行时间质谱记录的灵敏度和分辨率。
Clin Chem. 2005 Jan;51(1):65-74. doi: 10.1373/clinchem.2004.037283. Epub 2004 Nov 18.
7
A new maximum likelihood approach with asymmetric residual distribution for multicomponent mass spectra analysis.
Eur J Mass Spectrom (Chichester). 2004;10(5):573-8. doi: 10.1255/ejms.672.
8
Differential phosphoproteome profiling by affinity capture and tandem matrix-assisted laser desorption/ionization mass spectrometry.
Proteomics. 2004 May;4(5):1433-8. doi: 10.1002/pmic.200300683.
9
Serum protein MALDI profiling to distinguish upper aerodigestive tract cancer patients from control subjects.
J Natl Cancer Inst. 2003 Nov 19;95(22):1711-7. doi: 10.1093/jnci/djg099.
10
Characterization of the low molecular weight human serum proteome.低分子量人血清蛋白质组的表征
Mol Cell Proteomics. 2003 Oct;2(10):1096-103. doi: 10.1074/mcp.M300031-MCP200. Epub 2003 Aug 13.