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How molecular profiling could revolutionize drug discovery.分子图谱分析如何彻底改变药物研发。
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Protein microarrays for multiplex analysis of signal transduction pathways.用于信号转导通路多重分析的蛋白质微阵列。
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Immunohistochemical detection of EGFR in paraffin-embedded tumor tissues: variation in staining intensity due to choice of fixative and storage time of tissue sections.石蜡包埋肿瘤组织中表皮生长因子受体(EGFR)的免疫组织化学检测:因固定剂选择和组织切片保存时间导致的染色强度变化
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Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays.使用新型高密度反相裂解物微阵列对NCI-60癌细胞系进行蛋白质组分析。
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通过免疫层析结合反相裂解物微阵列技术测量基于组织的生物标志物。

Measuring tissue-based biomarkers by immunochromatography coupled with reverse-phase lysate microarray.

作者信息

Romeo Martin J, Wunderlich John, Ngo Lien, Rosenberg Steven A, Steinberg Seth M, Berman David M

机构信息

Laboratory of Pathology, Surgery Branch, and Biostatistics and Data Management Section, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.

出版信息

Clin Cancer Res. 2006 Apr 15;12(8):2463-7. doi: 10.1158/1078-0432.CCR-05-1479.

DOI:10.1158/1078-0432.CCR-05-1479
PMID:16638853
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2147079/
Abstract

PURPOSE

There is a need for new technologies to study tissue-based biomarkers. The current gold standard, immunohistochemistry, is compromised by variability in tissue processing and observer bias. Reverse transcription-PCR (RT-PCR), immunocytochemistry, and reverse-phase lysate microarrays (RPM) are promising alternative technologies but have not yet been validated, or correlated, on the same patient-derived tissues. Furthermore, RPM is currently limited by time-consuming microdissection and low amounts of evaluable protein lysates.

EXPERIMENTAL DESIGN

Metastatic melanoma was surgically excised from 30 patients and macroscopically dissected from surrounding stroma. Each specimen was processed by formalin-fixation (immunohistochemistry), cytospin (immunocytochemistry), or disaggreagation and enrichment (RT-PCR and RPM). The latter protocol uses immunochromatography to remove hematopoetic-derived cells, thus enriching for melanoma cells. Each sample was measured for the expression of gp100 or MART-1 normalized to actin.

RESULTS

Immunochromatography coupled with RPM (I-RPM) is reproducible (r >/= 0.70) and, for gp100, correlates strongly with immunohistochemistry and immunocytochemistry (r = 0.78 and 0.76, respectively) and moderately with transcript levels, measured by RT-PCR (r = 0.61). In contrast, for MART-1, I-RPM correlates strongly with transcript level (r = 0.78) but only moderately strong correlations are noted with immunohistochemistry and immunocytochemistry (r = 0.64 and 0.59, respectively). In general, transcript levels show only moderately strong correlations with immunohistochemistry and immunocytochemistry (r = 0.41-0.64).

CONCLUSION

I-RPM is a promising technology for quantitative grading of tissue biomarkers; however, antigen-dependent correlations are noted.

摘要

目的

需要新技术来研究基于组织的生物标志物。当前的金标准免疫组织化学,受到组织处理变异性和观察者偏差的影响。逆转录聚合酶链反应(RT-PCR)、免疫细胞化学和反相裂解物微阵列(RPM)是有前景的替代技术,但尚未在相同的患者来源组织上进行验证或关联。此外,RPM目前受到耗时的显微切割和可评估蛋白质裂解物量少的限制。

实验设计

从30例患者手术切除转移性黑色素瘤,并从周围基质进行宏观解剖。每个标本通过福尔马林固定(免疫组织化学)、细胞离心涂片(免疫细胞化学)或解离和富集(RT-PCR和RPM)进行处理。后一种方案使用免疫色谱法去除造血来源的细胞,从而富集黑色素瘤细胞。每个样本均检测gp100或MART-1的表达,并以肌动蛋白进行标准化。

结果

免疫色谱法与RPM相结合(I-RPM)具有可重复性(r≥0.70),对于gp100,与免疫组织化学和免疫细胞化学密切相关(分别为r = 0.78和0.76),与通过RT-PCR测量的转录水平中度相关(r = 0.61)。相比之下,对于MART-1,I-RPM与转录水平密切相关(r = 0.78),但与免疫组织化学和免疫细胞化学的相关性仅为中度(分别为r = 0.64和0.59)。总体而言,转录水平与免疫组织化学和免疫细胞化学仅呈中度密切相关(r = 0.41 - 0.64)。

结论

I-RPM是一种用于组织生物标志物定量分级的有前景的技术;然而,注意到了抗原依赖性相关性。