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网络基序是细胞复杂性的附带现象吗?

Are network motifs the spandrels of cellular complexity?

作者信息

Solé Ricard V, Valverde Sergi

机构信息

ICREA-Complex Systems Lab, Universitat Pompeu Fabra, Dr. Aiguader 80, 08003 Barcelona, Spain.

出版信息

Trends Ecol Evol. 2006 Aug;21(8):419-22. doi: 10.1016/j.tree.2006.05.013. Epub 2006 Jun 9.

Abstract

Cellular networks display modular organization at different levels, from small sets of genes exchanging signals in morphogenesis to large groups of proteins involved in cell death. At the smallest scale, minute groups of interacting proteins or genes, so-called 'network motifs', have been suggested to be the functional building blocks of network biology. In this context, the relative abundance of a network motif would reflect its adaptive value. However, although the overabundance of motifs is non-random, recent studies by Mazurie et al. and by Kuo et al. show that motif abundance does not reflect their true adaptive value. Just as some architectural components emerge as a byproduct of a prior decision, common motifs might be a side effect of inevitable rules of genome growth and change.

摘要

细胞网络在不同层面呈现出模块化组织,从形态发生过程中少量交换信号的基因,到参与细胞死亡的大量蛋白质。在最小尺度上,一小群相互作用的蛋白质或基因,即所谓的“网络基序”,被认为是网络生物学的功能构建单元。在这种情况下,网络基序的相对丰度将反映其适应性价值。然而,尽管基序的过度丰富并非随机,但Mazurie等人和Kuo等人最近的研究表明,基序丰度并不反映其真正的适应性价值。正如一些建筑组件是先前决策的副产品一样,常见的基序可能是基因组生长和变化的必然规则的副作用。

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