Schmidt Bryan, Ho Lorraine, Hogg Philip J
Centre for Vascular Research, University of New South Wales and Department of Haematology, Prince of Wales Hospital, Sydney, New South Wales 2052, Australia.
Biochemistry. 2006 Jun 20;45(24):7429-33. doi: 10.1021/bi0603064.
Disulfide bonds have been generally considered to be either structural or catalytic. Structural bonds stabilize a protein, while catalytic bonds mediate thiol-disulfide interchange reactions in substrate proteins. There is emerging evidence for a third type of disulfide bond that can control protein function by triggering a conformational change when it breaks and/or forms. These bonds can be thought of as allosteric disulfides. To better define the properties of allosteric disulfides, we have analyzed the geometry and dihedral strain of 6874 unique disulfide bonds in 2776 X-ray structures. A total of 20 types of disulfide bonds were identified in the dataset based on the sign of the five chi angles that make up the bond. The known allosteric disulfides were all contained in 1 of the 20 groups, the -RHStaple bonds. This bond group has a high mean potential energy and narrow energy distribution, which is consistent with a functional role. We suggest that the -RHStaple configuration is a hallmark of allosteric disulfides. About 1 in 15 of all structurally determined disulfides is a potential allosteric bond.
二硫键通常被认为具有结构或催化功能。结构二硫键可稳定蛋白质,而催化二硫键则介导底物蛋白质中的硫醇-二硫键交换反应。越来越多的证据表明,存在第三种类型的二硫键,它在断裂和/或形成时可通过引发构象变化来控制蛋白质功能。这些二硫键可被视为变构二硫键。为了更好地定义变构二硫键的特性,我们分析了2776个X射线结构中6874个独特二硫键的几何形状和二面角应变。根据构成二硫键的五个卡角的符号,在数据集中共鉴定出20种类型的二硫键。已知的变构二硫键均包含在20个组中的一个组中,即-RHStaple键。该键组具有较高的平均势能和较窄的能量分布,这与它的功能作用相一致。我们认为-RHStaple构型是变构二硫键的一个标志。在所有结构确定的二硫键中,约十五分之一是潜在的变构键。