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通过高压冷冻冷却和稀有气体定相法解析蛋白质晶体结构

Solution of protein crystallographic structures by high-pressure cryocooling and noble-gas phasing.

作者信息

Kim Chae Un, Hao Quan, Gruner Sol M

机构信息

Field of Biophysics, Cornell University, Ithaca, NY 14853, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2006 Jul;62(Pt 7):687-94. doi: 10.1107/S0907444906014727. Epub 2006 Jun 20.

Abstract

Room-pressure flash-cryocooling of protein crystals is the standard way to reduce radiation damage during data collection. Typically, it is necessary to find cryoprotection conditions by trial and error, a process that is not always successful. Recently, a new method, high-pressure cryocooling, was developed that does not require penetrative cryoprotectants and typically yields very high quality diffraction. Since this method involves helium gas as a pressurizing medium, it was of great interest to see whether the method could be extended to diffraction phasing by the incorporation of heavy noble gases such as krypton. A modified Kr-He high-pressure cyrocooling procedure is described wherein crystals are first pressurized with krypton gas to 10 MPa for 1 h. The krypton pressure is then released and the crystals are repressurized with helium over 150 MPa and cooled to liquid-nitrogen temperatures. Porcine pancreas elastase (PPE; 240 residues, 26 kDa) was selected as a test case for this study. Excellent diffraction was achieved by high-pressure cryocooling without penetrating cryoprotectants. A single 0.31 occupied krypton site in a PPE molecule [Bijvoet amplitude ratio (|DeltaF|/F) of 0.53%] was successfully used for SAD phasing at 1.3 A. This method has the potential to greatly simplify obtaining protein structures.

摘要

蛋白质晶体的室温压力闪速冷冻是在数据收集过程中减少辐射损伤的标准方法。通常,需要通过反复试验来寻找冷冻保护条件,而这个过程并不总是成功的。最近,一种新的方法——高压冷冻被开发出来,这种方法不需要渗透性冷冻保护剂,并且通常能产生非常高质量的衍射。由于这种方法涉及氦气作为加压介质,因此很有必要看看该方法是否可以通过引入氪等重稀有气体扩展到衍射相位测定。本文描述了一种改进的氪 - 氦高压冷冻程序,其中晶体首先用氪气加压至10 MPa并保持1小时。然后释放氪气压力,再用氦气将晶体重新加压至超过150 MPa并冷却至液氮温度。猪胰腺弹性蛋白酶(PPE;240个残基,26 kDa)被选作本研究的测试案例。通过高压冷冻在不使用渗透性冷冻保护剂的情况下获得了出色的衍射结果。在PPE分子中一个占有率为0.31的氪位点[比沃伊特振幅比(|ΔF|/F)为0.53%]成功用于1.3 Å下的单波长反常散射(SAD)相位测定。这种方法有可能极大地简化蛋白质结构的获取过程。

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