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利用剩余偶极耦合以及15N弛豫数据对双结构域蛋白质中的结构域间动力学进行分析。

Analysis of interdomain dynamics in a two-domain protein using residual dipolar couplings together with 15N relaxation data.

作者信息

Ryabov Yaroslav, Fushman David

机构信息

Department of Chemistry and Biochemistry, Center for Biomolecular Structure and Organization, University of Maryland, College Park, MD 20742, USA.

出版信息

Magn Reson Chem. 2006 Jul;44 Spec No:S143-51. doi: 10.1002/mrc.1822.

Abstract

In this paper, we propose the idea that simultaneous analysis of NMR relaxation data and residual dipolar couplings (RDCs) can provide information about interdomain dynamics in a multidomain protein, which cannot be derived from each data set separately. Specifically, such an approach can be useful when the interdomain motions occur on a timescale comparable to or slower than the overall tumbling in solution. We analyze residual dipolar couplings together with 15N relaxation data for Lys48-linked di-ubiquitin (Ub2), in which interdomain dynamics are described as interconversion between two distinct conformational states of the protein. Our results show that 15N relaxation and residual dipolar coupling data can be used as two complementary experimental data sets for consistent characterization of interdomain conformations and dynamics in this dual-domain protein.

摘要

在本文中,我们提出这样一个观点:同时分析核磁共振弛豫数据和剩余偶极耦合(RDC)能够提供关于多结构域蛋白质中结构域间动力学的信息,而这些信息无法从单独的每个数据集得出。具体而言,当结构域间运动发生的时间尺度与溶液中的整体翻滚相当或比其更慢时,这种方法会很有用。我们将剩余偶极耦合与赖氨酸48连接的双泛素(Ub2)的15N弛豫数据一起进行分析,其中结构域间动力学被描述为蛋白质两种不同构象状态之间的相互转换。我们的结果表明,15N弛豫和剩余偶极耦合数据可作为两个互补的实验数据集,用于一致地表征这种双结构域蛋白质中结构域间的构象和动力学。

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