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蛋白质表面跨接水网络的特性。

Properties of spanning water networks at protein surfaces.

作者信息

Smolin Nikolai, Oleinikova Alla, Brovchenko Ivan, Geiger Alfons, Winter Roland

机构信息

Physikalische Chemie, Universität Dortmund, Otto-Hahn-Strasse 6, Dortmund, D-44227, Germany.

出版信息

J Phys Chem B. 2005 Jun 2;109(21):10995-1005. doi: 10.1021/jp050153e.

Abstract

The formation of a spanning two-dimensional hydrogen-bonded water network at the surface of proteins via a percolation transition enables their biological function. We show in detail how the spanning (percolating) water network appears at the surfaces of model hydrophilic spheres and at the surface of a single protein (lysozyme) molecule. We have found essential correlations of the linear extension, radius of gyration, and position of the center of mass of the largest water cluster with its size. The specific two-peak structure of the probability distribution of the largest cluster size allowed us to study various properties separately for spanning and nonspanning largest clusters. The radius of gyration of the spanning cluster always exceeds the radii of the spheres or the effective radius of the protein. Any spanning cluster envelops essentially more than half of the surface area. The temporal decay of the spanning networks shows a stretched exponential character. Their average lifetime at the percolation threshold is about the lifetime of a water-water hydrogen bond.

摘要

通过渗流转变在蛋白质表面形成二维氢键水网络使其具有生物学功能。我们详细展示了跨接(渗流)水网络如何出现在模型亲水球体表面和单个蛋白质(溶菌酶)分子表面。我们发现最大水簇的线性延伸、回转半径和质心位置与其大小之间存在重要关联。最大簇尺寸概率分布的特定双峰结构使我们能够分别研究跨接和非跨接最大簇的各种性质。跨接簇的回转半径总是超过球体半径或蛋白质的有效半径。任何跨接簇基本上覆盖了超过一半的表面积。跨接网络的时间衰减呈现拉伸指数特征。它们在渗流阈值下的平均寿命约为水 - 水氢键的寿命。

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