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通过二维渗流转变在蛋白质表面形成跨越水网络。

Formation of spanning water networks on protein surfaces via 2D percolation transition.

作者信息

Oleinikova Alla, Smolin Nikolai, Brovchenko Ivan, Geiger Alfons, Winter Roland

机构信息

Physikalische Chemie, Universität Dortmund, Otto-Hahn-Str. 6, Dortmund, D-44221, Germany.

出版信息

J Phys Chem B. 2005 Feb 10;109(5):1988-98. doi: 10.1021/jp045903j.

Abstract

The formation of spanning hydrogen-bonded water networks on protein surfaces by a percolation transition is closely connected with the onset of their biological activity. To analyze the structure of the hydration water at this important threshold, we performed the first computer simulation study of the percolation transition of water in a model protein powder and on the surface of a single protein molecule. The formation of an infinite water network in the protein powder occurs as a 2D percolation transition at a critical hydration level, which is close to the values observed experimentally. The formation of a spanning 2D water network on a single rigid protein molecule can be described by adapting the cluster analysis of conventional percolation studies to the characterization of the connectivity of the hydration water on the surface of finite objects. Strong fluctuations of the surface water network are observed close to the percolation threshold. Our simulations also furnish a microscopic picture for understanding the specific values of the experimentally observed hydration levels, where different steps of increasing mobility in the hydrated powder are observed.

摘要

通过渗流转变在蛋白质表面形成跨越氢键的水网络与它们生物活性的开始密切相关。为了分析在这个重要阈值下的水化水结构,我们对模型蛋白粉和单个蛋白质分子表面的水的渗流转变进行了首次计算机模拟研究。蛋白粉中无限水网络的形成在临界水化水平下作为二维渗流转变发生,这与实验观察到的值接近。通过将传统渗流研究的聚类分析应用于有限物体表面水化水连通性的表征,可以描述单个刚性蛋白质分子上跨越二维水网络的形成。在渗流阈值附近观察到表面水网络的强烈波动。我们的模拟还为理解实验观察到的水化水平的特定值提供了微观图像,在水化粉末中观察到了流动性增加的不同阶段。

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