DNA序列基序发现是如何工作的？ - Suppr

How does DNA sequence motif discovery work?

作者信息

D'haeseleer Patrik

机构信息

Microbial Systems Division, Biosciences Directorate, Lawrence Livermore National Laboratory, 7000 East Ave., PO Box 808, L-448, Livermore, CA 94551, USA.

出版信息

Nat Biotechnol. 2006 Aug;24(8):959-61. doi: 10.1038/nbt0806-959.

DOI:10.1038/nbt0806-959

PMID:16900144

Abstract

摘要

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相似文献

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Bioinformatics. 2008 Jan 1;24(1):46-55. doi: 10.1093/bioinformatics/btm543. Epub 2007 Nov 17.

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J Biomed Inform. 2006 Feb;39(1):18-33. doi: 10.1016/j.jbi.2005.11.005. Epub 2005 Dec 9.

Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.

Bioinformatics. 2006 Dec 15;22(24):3099-100. doi: 10.1093/bioinformatics/btl551. Epub 2006 Nov 8.

Statistical detection of chromosomal homology using shared-gene density alone.

Bioinformatics. 2005 Apr 15;21(8):1339-48. doi: 10.1093/bioinformatics/bti168. Epub 2004 Dec 7.

Sequence features of DNA binding sites reveal structural class of associated transcription factor.

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MUSA: a parameter free algorithm for the identification of biologically significant motifs.

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A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

Bioinformatics. 2005 May 15;21(10):2240-5. doi: 10.1093/bioinformatics/bti336. Epub 2005 Feb 22.

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Brief Bioinform. 2025 Jul 2;26(4). doi: 10.1093/bib/bbaf363.

BIOMAPP::CHIP: large-scale motif analysis.

BMC Bioinformatics. 2024 Mar 26;25(1):128. doi: 10.1186/s12859-024-05752-3.

distillation of thermodynamic affinity from deep learning regulatory sequence models of protein-DNA binding.

bioRxiv. 2023 May 11:2023.05.11.540401. doi: 10.1101/2023.05.11.540401.

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Brief Bioinform. 2023 May 19;24(3). doi: 10.1093/bib/bbad156.

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Appl Plant Sci. 2020 Jul 28;8(7):e11376. doi: 10.1002/aps3.11376. eCollection 2020 Jul.

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SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.

BMC Bioinformatics. 2018 Jun 18;19(1):228. doi: 10.1186/s12859-018-2242-y.

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

BMC Bioinformatics. 2018 Jun 11;19(1):223. doi: 10.1186/s12859-018-2215-1.

A systematic approach to RNA-associated motif discovery.

BMC Genomics. 2018 Feb 14;19(1):146. doi: 10.1186/s12864-018-4528-x.

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How does DNA sequence motif discovery work?

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How does DNA sequence motif discovery work?

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