• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

丝氨酸/精氨酸剪接因子家族(SR)通过正选择的分子进化

Molecular evolution of serine/arginine splicing factors family (SR) by positive selection.

作者信息

Escobar Andrés J Gutiérrez, Arenas Aylan Farid, Gómez-Marin Jorge Enrique

机构信息

Grupo de Parasitología Molecular (GEPAMOL), Centro de Investigaciones Biomédicas, Facultad de Ciencias de la Salud, Universidad del Quindío, Armenia, Colombia.

出版信息

In Silico Biol. 2006;6(4):347-50.

PMID:16922697
Abstract

The serine-rich (SR) protein family is involved in the pre-mRNA splicing process and the DNA sequences of the corresponding genes are highly conserved in the metazoan organisms. The mammalian SR proteins consist of one or two characteristic RNA binding domains (RBD), containing the signature sequences RDAEDA and SWQDLKD and a RS (arginine/serine-rich) domain. We used the amino acid and nucleotide sequences deposited in GenBank and Swiss-Prot databases to perform a phylogenetic analysis using bioinformatics tools. The results of the phylogenetic trees suggest that this family has evolved by several gene duplication events as a result of a positive selection mechanism.

摘要

富含丝氨酸(SR)蛋白家族参与前体mRNA剪接过程,并且相应基因的DNA序列在后生动物中高度保守。哺乳动物SR蛋白由一个或两个特征性RNA结合结构域(RBD)组成,包含特征序列RDAEDA和SWQDLKD以及一个RS(富含精氨酸/丝氨酸)结构域。我们使用GenBank和Swiss-Prot数据库中存储的氨基酸和核苷酸序列,利用生物信息学工具进行了系统发育分析。系统发育树的结果表明,由于正选择机制,该家族通过几次基因复制事件进化而来。

相似文献

1
Molecular evolution of serine/arginine splicing factors family (SR) by positive selection.丝氨酸/精氨酸剪接因子家族(SR)通过正选择的分子进化
In Silico Biol. 2006;6(4):347-50.
2
Co-evolution of the branch site and SR proteins in eukaryotes.真核生物中分支位点与SR蛋白的共同进化。
Trends Genet. 2008 Dec;24(12):590-4. doi: 10.1016/j.tig.2008.10.004. Epub 2008 Nov 5.
3
Identification and characterization of srp1, a gene of fission yeast encoding a RNA binding domain and a RS domain typical of SR splicing factors.裂殖酵母中一个编码RNA结合结构域和典型SR剪接因子RS结构域的基因srp1的鉴定与表征。
Nucleic Acids Res. 1998 Jan 15;26(2):505-11. doi: 10.1093/nar/26.2.505.
4
Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA.SR(丝氨酸/精氨酸)蛋白在调控信使前体RNA可变剪接中的广泛特异性。
Prog Nucleic Acid Res Mol Biol. 2004;78:37-88. doi: 10.1016/S0079-6603(04)78002-2.
5
ASF/SF2-like maize pre-mRNA splicing factors affect splice site utilization and their transcripts are alternatively spliced.ASF/SF2样玉米前体mRNA剪接因子影响剪接位点的利用,并且它们的转录本存在可变剪接。
Gene. 2004 Sep 15;339:25-37. doi: 10.1016/j.gene.2004.06.047.
6
Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.拟南芥富含丝氨酸/精氨酸蛋白前体mRNA的可变剪接:激素和胁迫的调控
Plant J. 2007 Mar;49(6):1091-107. doi: 10.1111/j.1365-313X.2006.03020.x. Epub 2007 Feb 22.
7
RS domain-splicing signal interactions in splicing of U12-type and U2-type introns.U12型和U2型内含子剪接过程中RS结构域与剪接信号的相互作用
Nat Struct Mol Biol. 2007 Jul;14(7):597-603. doi: 10.1038/nsmb1263. Epub 2007 Jul 1.
8
SR proteins: a foot on the exon before the transition from intron to exon definition.SR蛋白:在从内含子定义向外显子定义转变之前,一只脚踩在外显子上。
Trends Genet. 2007 Jan;23(1):5-7. doi: 10.1016/j.tig.2006.10.002. Epub 2006 Oct 30.
9
Common phylogenetic origin of protamine-like (PL) proteins and histone H1: Evidence from bivalve PL genes.鱼精蛋白样(PL)蛋白与组蛋白H1的共同系统发育起源:来自双壳贝类PL基因的证据
Mol Biol Evol. 2006 Jun;23(6):1304-17. doi: 10.1093/molbev/msk021. Epub 2006 Apr 13.
10
Identification of a family of DNA-binding proteins with homology to RNA splicing factors.
Biochem Cell Biol. 2006 Feb;84(1):9-19. doi: 10.1139/o05-139.

引用本文的文献

1
Enhancing in silico protein-based vaccine discovery for eukaryotic pathogens using predicted peptide-MHC binding and peptide conservation scores.利用预测的肽-MHC结合和肽保守性评分增强针对真核病原体的基于计算机蛋白质的疫苗发现。
PLoS One. 2014 Dec 29;9(12):e115745. doi: 10.1371/journal.pone.0115745. eCollection 2014.
2
A novel CDX2 isoform regulates alternative splicing.一种新型CDX2亚型调控可变剪接。
PLoS One. 2014 Aug 7;9(8):e104293. doi: 10.1371/journal.pone.0104293. eCollection 2014.
3
Evolution of SR protein and hnRNP splicing regulatory factors.
SR 蛋白和 hnRNP 剪接调控因子的进化。
Wiley Interdiscip Rev RNA. 2012 Jan-Feb;3(1):1-12. doi: 10.1002/wrna.100. Epub 2011 Sep 2.
4
NSrp70 is a novel nuclear speckle-related protein that modulates alternative pre-mRNA splicing in vivo.NSrp70 是一种新型核斑点相关蛋白,可调节体内的选择性前体 mRNA 剪接。
Nucleic Acids Res. 2011 May;39(10):4300-14. doi: 10.1093/nar/gkq1267. Epub 2011 Feb 3.
5
The SR protein family.SR 蛋白家族。
Genome Biol. 2009;10(10):242. doi: 10.1186/gb-2009-10-10-242. Epub 2009 Oct 27.