• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

昆虫的标准DNA序列差异百分比无法预测物种界限。

Standard percent DNA sequence difference for insects does not predict species boundaries.

作者信息

Cognato Anthony I

机构信息

Department of Entomology, Michigan State University, East Lansing, MI 48824, USA.

出版信息

J Econ Entomol. 2006 Aug;99(4):1037-45. doi: 10.1603/0022-0493-99.4.1037.

DOI:10.1603/0022-0493-99.4.1037
PMID:16937653
Abstract

Diagnosis and assessment of species boundaries of economically important insects are often problematic because of limited morphological and/or biological characters. DNA data can help to identify and revise species. Nonoverlapping intra- and interspecific sequence divergences are often used as evidence for species. Thus, the establishment of a standardized percent nucleotide divergence to predict species boundaries would aid in cases where species status is suspect. However, given variation in nucleotide mutation rates and species concepts, association between a standard percent sequence divergence and species is questionable. This review surveys the percent DNA sequence difference found between sister-species of economically important insects, to assess whether a standard divergence associates with all taxa. Sixty-two comparisons of intra- and interspecific pairwise DNA differences were made for mitochondrial and nuclear loci spanning families of Isoptera, Phthiraptera, Hemiptera, Coleoptera, Lepidoptera, Diptera, and Hymenoptera. Intra- and interspecific sequence divergences varied widely among insects, 0.04-26.0 and 1.0-30.7%, respectively. The ranges of intra- and interspecific sequence divergences overlapped in 28 of 62 comparisons. This implies that a standardized percent sequence divergence would fail to correctly diagnose species for 45% of the cases. Common occurrence of nonmonophyly among closely related species probably explains this observation. Nonmonophyly and overlap of intra- and interspecific divergences were significantly associated. The reviewed studies suggest that a standard percent sequence divergence does not predict species boundaries among economically important insects. DNA data can help best to predict species boundaries via its inclusion in nonphenetic phylogenetic analysis and subsequent systematic expert scrutiny.

摘要

由于形态学和/或生物学特征有限,对经济上重要昆虫的物种界限进行诊断和评估往往存在问题。DNA数据有助于识别和修订物种。种内和种间序列分歧不重叠通常被用作物种的证据。因此,建立一个标准化的核苷酸分歧百分比来预测物种界限将有助于处理物种地位存疑的情况。然而,考虑到核苷酸突变率和物种概念的差异,标准序列分歧百分比与物种之间的关联是值得怀疑的。本综述调查了经济上重要昆虫的姊妹种之间的DNA序列差异百分比,以评估标准分歧是否与所有分类群相关。对等翅目、啮目、半翅目、鞘翅目、鳞翅目、双翅目和膜翅目各科的线粒体和核基因座进行了62次种内和种间成对DNA差异比较。昆虫的种内和种间序列分歧差异很大,分别为0.04 - 26.0%和1.0 - 30.7%。在62次比较中,有28次种内和种间序列分歧范围重叠。这意味着标准化的序列分歧百分比在45%的情况下无法正确诊断物种。密切相关物种中常见的非单系性可能解释了这一现象。非单系性与种内和种间分歧的重叠显著相关。综述研究表明,标准序列分歧百分比无法预测经济上重要昆虫的物种界限。DNA数据通过纳入非表型系统发育分析和随后的系统专家审查,最有助于预测物种界限。

相似文献

1
Standard percent DNA sequence difference for insects does not predict species boundaries.昆虫的标准DNA序列差异百分比无法预测物种界限。
J Econ Entomol. 2006 Aug;99(4):1037-45. doi: 10.1603/0022-0493-99.4.1037.
2
The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology.捻翅目问题:从18S和28S核糖体DNA序列及形态学推断全变态昆虫目的系统发育
Syst Biol. 1997 Mar;46(1):1-68. doi: 10.1093/sysbio/46.1.1.
3
Interspecific phylogeography of the Stator limbatus species complex: the geographic context of speciation and specialization.缘斑豆象物种复合体的种间系统地理学:物种形成与特化的地理背景
Mol Phylogenet Evol. 2005 Aug;36(2):201-13. doi: 10.1016/j.ympev.2005.04.006.
4
Diversifying into the branches: Species boundaries in African green and bush snakes, Philothamnus (Serpentes: Colubridae).分支多样化:非洲绿树蟒和灌木蛇属(蛇目:游蛇科)中的物种界限。
Mol Phylogenet Evol. 2019 Jan;130:357-365. doi: 10.1016/j.ympev.2018.10.023. Epub 2018 Oct 23.
5
The DNA barcoding and the caveats with respect to its application to some species of Palaemonidae (Crustacea, Decapoda).DNA条形码及其在某些长臂虾科(甲壳纲,十足目)物种应用中的注意事项。
Zoolog Sci. 2012 Oct;29(10):714-24. doi: 10.2108/zsj.29.714.
6
Multilocus approach to clarify species status and the divergence history of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex.采用多位点方法阐明烟粉虱(半翅目:粉虱科)物种复合体的物种地位和分化历史。
Mol Phylogenet Evol. 2014 Jul;76:172-80. doi: 10.1016/j.ympev.2014.03.021. Epub 2014 Mar 29.
7
Sequence-based species delimitation for the DNA taxonomy of undescribed insects.基于序列的未描述昆虫DNA分类学中的物种界定
Syst Biol. 2006 Aug;55(4):595-609. doi: 10.1080/10635150600852011.
8
Speciation history of three closely related pines Pinus mugo (T.), P. uliginosa (N.) and P. sylvestris (L.).三种密切相关的松树(欧洲赤松、高山松和欧洲云杉)的物种形成历史。
Mol Ecol. 2011 Apr;20(8):1729-43. doi: 10.1111/j.1365-294X.2011.05037.x. Epub 2011 Mar 7.
9
Systematics of holometabolous insect orders based on 18S ribosomal RNA.基于18S核糖体RNA的全变态昆虫目的系统学
Mol Phylogenet Evol. 1993 Jun;2(2):132-42. doi: 10.1006/mpev.1993.1013.
10
Timeframes of speciation, reticulation, and hybridization in the bulldog bat explained through phylogenetic analyses of all genetic transmission elements.通过对所有遗传传递要素的系统发育分析来解释犬蝠的物种形成、网状进化和杂交的时间框架。
Syst Biol. 2014 Jan 1;63(1):96-110. doi: 10.1093/sysbio/syt062. Epub 2013 Oct 22.

引用本文的文献

1
DNA barcoding of Japanese earwig species (Insecta, Dermaptera), with sequence diversity analyses of three species of Anisolabididae.日本蠼螋物种(昆虫纲,革翅目)的DNA条形码分析,以及三种球螋科物种的序列多样性分析
Biodivers Data J. 2023 Sep 27;11:e107001. doi: 10.3897/BDJ.11.e107001. eCollection 2023.
2
Two sympatric lineages of Australian Cnestus solidus share Ambrosiella symbionts but not Wolbachia.澳大利亚 Cnestus solidus 的两个共生谱系共享 Ambrosiella 共生体,但不共享 Wolbachia。
Heredity (Edinb). 2024 Jan;132(1):43-53. doi: 10.1038/s41437-023-00659-w. Epub 2023 Nov 10.
3
Identification and reproductive isolation of species (Insecta, Dermaptera, Anisolabididae) from East and Southeast Asia.
东亚和东南亚物种(昆虫纲,革翅目,肥螋科)的鉴定与生殖隔离
Zookeys. 2023 Feb 7;1146:115-134. doi: 10.3897/zookeys.1146.98248. eCollection 2023.
4
Introducing an rbcL and a trnL reference library to aid in the metabarcoding analysis of foraged plants from two semi-arid eastern South African savanna bioregions.引入 rbcL 和 trnL 参考文库,以辅助分析来自南非东部两个半干旱稀树草原生物区系的采集植物的代谢组学分析。
PLoS One. 2023 May 19;18(5):e0286144. doi: 10.1371/journal.pone.0286144. eCollection 2023.
5
What's left in the tank? Identification of non-ascribed aquarium's coral collections with DNA barcodes as part of an integrated diagnostic approach.水族箱里还剩下什么?利用DNA条形码鉴定来源不明的水族箱珊瑚藏品,作为综合诊断方法的一部分。
Conserv Genet Resour. 2022;14(2):167-182. doi: 10.1007/s12686-021-01250-3. Epub 2022 Jan 11.
6
Evaluation of Arabian Vascular Plant Barcodes (rbcL and matK): Precision of Unsupervised and Supervised Learning Methods towards Accurate Identification.阿拉伯维管植物条形码(rbcL和matK)评估:无监督和监督学习方法对准确识别的精度
Plants (Basel). 2021 Dec 13;10(12):2741. doi: 10.3390/plants10122741.
7
The Application of Mitochondrial COI Gene-Based Molecular Identification of Forensically Important Scuttle Flies (Diptera: Phoridae) in Korea.韩国法医学重要粪蝇(双翅目:麻蝇科)基于线粒体 COI 基因的分子鉴定应用。
Biomed Res Int. 2020 Sep 28;2020:6235848. doi: 10.1155/2020/6235848. eCollection 2020.
8
Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads.使用模拟reads 测试短读和长读真核宏基因组学的优缺点。
BMC Bioinformatics. 2020 May 29;21(1):220. doi: 10.1186/s12859-020-3528-4.
9
Deciphering phylogenetic relationships and delimiting species boundaries using a Bayesian coalescent approach in protists: A case study of the ciliate genus Spirostomum (Ciliophora, Heterotrichea).使用贝叶斯合并方法在原生动物中破译系统发育关系和划定物种界限:以纤毛门(异毛目)的旋口虫属(Spirostomum)为例。
Sci Rep. 2019 Nov 8;9(1):16360. doi: 10.1038/s41598-019-52722-4.
10
A keeper of many crypts: a behaviour-manipulating parasite attacks a taxonomically diverse array of oak gall wasp species.一个拥有众多巢穴的守护者:一种行为操纵寄生虫攻击了分类多样的栎瘿蜂物种。
Biol Lett. 2019 Sep 27;15(9):20190428. doi: 10.1098/rsbl.2019.0428. Epub 2019 Sep 25.