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肌动蛋白结合蛋白头部片段的模拟未折叠态系综与实验核磁共振结构产生了相似的广角溶液X射线散射图谱。

Simulated unfolded-state ensemble and the experimental NMR structures of villin headpiece yield similar wide-angle solution X-ray scattering profiles.

作者信息

Zagrovic Bojan, Pande Vijay S

机构信息

Physical Chemistry Institute, ETH Zurich, 8093 Zurich, Switzerland.

出版信息

J Am Chem Soc. 2006 Sep 13;128(36):11742-3. doi: 10.1021/ja0640694.

Abstract

With the advent of powerful synchrotron sources, solution X-ray scattering is being increasingly used to get basic information about the structure of polypeptides. The solution scattering technique essentially provides one-dimensional data, which are then interpreted in terms of a three-dimensional structure through model building. Here we calculate wide-angle solution scattering patterns for an ensemble of simulated unfolded structures of villin headpiece, which differ from the native structure by rmsd = 8.8 +/- 1.0 A and have only negligible amounts of native secondary structure. We show that the wide-angle solution scattering pattern of such an ensemble shares significant similarity with the one based on the experimental NMR structures of the molecule. Our results suggest that solution scattering in the wide-angle limit, by itself, provides very little information about the secondary structure content of a polypeptide or its side-chain packing.

摘要

随着强大的同步辐射源的出现,溶液X射线散射越来越多地被用于获取有关多肽结构的基本信息。溶液散射技术本质上提供一维数据,然后通过模型构建将其解释为三维结构。在这里,我们计算了绒毛蛋白头部片段模拟未折叠结构集合的广角溶液散射模式,这些结构与天然结构的均方根偏差(rmsd)为8.8±1.0 Å,并且仅具有可忽略量的天然二级结构。我们表明,这样一个集合的广角溶液散射模式与基于该分子实验NMR结构的模式具有显著相似性。我们的结果表明,在广角极限下的溶液散射本身提供的关于多肽二级结构含量或其侧链堆积的信息非常少。

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