Mühlbacher F, Schiessel H, Holm C
Max-Planck-Institut für Polymerforschung, Theory Group, PO Box 3147, D-55021, Mainz, Germany.
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Sep;74(3 Pt 1):031919. doi: 10.1103/PhysRevE.74.031919. Epub 2006 Sep 27.
We study a possible electrostatic mechanism underlying the compaction of DNA inside the nuclei of eucaryotes: the tail-bridging effect between nucleosomes, the fundamental DNA packaging units of the chromatin complex. As a simple model of the nucleosome we introduce the eight-tail colloid, a charged sphere with eight oppositely charged, flexible, grafted chains that represent the terminal histone tails. We show that our complexes attract each other via the formation of chain bridges and contrast this to the effect of attraction via charge patches. We demonstrate that the attraction between eight-tail colloids can be tuned by changing the fraction of charged monomers on the tails. This suggests a physical mechanism of chromatin compaction where the degree of DNA condensation is controlled via biochemical means, namely the acetylation and deacetylation of lysines in the histone tails.
我们研究了真核生物细胞核内DNA压缩背后可能的静电机制:核小体(染色质复合体的基本DNA包装单元)之间的尾桥效应。作为核小体的一个简单模型,我们引入了八尾胶体,即一个带电荷的球体,带有八条带相反电荷的柔性接枝链,代表末端组蛋白尾巴。我们表明,我们的复合体通过链桥的形成相互吸引,并将此与通过电荷斑块的吸引效应进行对比。我们证明,通过改变尾巴上带电荷单体的比例,可以调节八尾胶体之间的吸引力。这表明了一种染色质压缩的物理机制,其中DNA凝聚程度是通过生化手段控制的,即组蛋白尾巴中赖氨酸的乙酰化和去乙酰化。