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液相色谱-质谱分析在代谢组学中的应用:反相整体毛细管色谱和亲水色谱与电喷雾电离-质谱联用

Application of liquid chromatography-mass spectrometry analysis in metabolomics: reversed-phase monolithic capillary chromatography and hydrophilic chromatography coupled to electrospray ionization-mass spectrometry.

作者信息

Tolstikov Vladimir V, Fiehn Oliver, Tanaka Nobuo

机构信息

Genome Center, University of California-Davis, USA.

出版信息

Methods Mol Biol. 2007;358:141-55. doi: 10.1007/978-1-59745-244-1_9.

DOI:10.1007/978-1-59745-244-1_9
PMID:17035685
Abstract

Analysis of the entire metabolome as the sum of all detectable components in the sample rather than analysis of each individual metabolite is performed by the metabolomics approaches. To monitor in parallel hundreds or even thousands of metabolites, high-throughput techniques are required that enable screening for relative changes rather than absolute concentrations of compounds. Most analytical techniques for profiling small molecules consist of gas chromatography (GC) or high-performance liquid chromatography (HPLC) coupled to mass spectrometry. HPLC separations are better suited for the analysis of labile and high molecular weight compounds, and for the analysis of nonvolatile polar compounds in their natural form. Although GC- and HPLC-based profiling techniques are not truly quantitative, the compounds detecting and employing the acceptable standards may compare their relative amounts. We have demonstrated that reversed-phase monolithic capillary chromatography and hydrophilic chromatography can be successfully applied for sufficient plant crude extracts separations and metabolomics studies.

摘要

代谢组学方法是对样本中所有可检测成分的总和进行整体代谢组分析,而非对每个单独的代谢物进行分析。为了并行监测数百甚至数千种代谢物,需要高通量技术,以便能够筛选化合物的相对变化而非绝对浓度。大多数小分子分析技术由气相色谱(GC)或与质谱联用的高效液相色谱(HPLC)组成。HPLC分离更适合分析不稳定和高分子量的化合物,以及分析天然形式的非挥发性极性化合物。尽管基于GC和HPLC的分析技术并非真正定量,但检测化合物并采用可接受标准可以比较它们的相对含量。我们已经证明,反相整体毛细管色谱和亲水色谱可以成功应用于植物粗提物的充分分离和代谢组学研究。

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Application of liquid chromatography-mass spectrometry analysis in metabolomics: reversed-phase monolithic capillary chromatography and hydrophilic chromatography coupled to electrospray ionization-mass spectrometry.液相色谱-质谱分析在代谢组学中的应用:反相整体毛细管色谱和亲水色谱与电喷雾电离-质谱联用
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A comprehensive workflow of mass spectrometry-based untargeted metabolomics in cancer metabolic biomarker discovery using human plasma and urine.一种基于质谱的非靶向代谢组学在利用人血浆和尿液发现癌症代谢生物标志物中的综合工作流程。
Metabolites. 2013 Sep 11;3(3):787-819. doi: 10.3390/metabo3030787.
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Advantages of tandem LC-MS for the rapid assessment of tissue-specific metabolic complexity using a pentafluorophenylpropyl stationary phase.
串联 LC-MS 用于快速评估组织特异性代谢复杂性的优势,使用五氟苯基丙基固定相。
J Proteome Res. 2011 Apr 1;10(4):2104-12. doi: 10.1021/pr1011119. Epub 2011 Mar 7.
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Divergent metabolome and proteome suggest functional independence of dual phloem transport systems in cucurbits.在葫芦科植物中,不同的代谢组和蛋白质组表明双韧皮部运输系统功能独立。
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The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery.液相色谱-质谱联用技术(LC-MS)在代谢谱分析和代谢组学研究中用于发现生物标志物的未来发展。
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