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拓扑数据的可重复性和可转移性:L-丙氨酰-L-酪氨酰-L-丙氨酸两种变体的实验电荷密度研究

Reproducibility and transferability of topological data: experimental charge density study of two modifications of L-alanyl-L-tyrosyl-L-alanine.

作者信息

Checińska Lilianna, Mebs Stefan, Hübschle Christian B, Förster Diana, Morgenroth Wolfgang, Luger Peter

机构信息

Department of Crystallography and Crystal Chemistry, University of Łódź, Pomorska 149/153, 90 236, Łódź, Poland.

出版信息

Org Biomol Chem. 2006 Sep 7;4(17):3242-51. doi: 10.1039/b607744g. Epub 2006 Aug 2.

DOI:10.1039/b607744g
PMID:17036112
Abstract

Two crystalline modifications of the tripeptide L-Ala-L-Tyr-L-Ala, which have different solvent molecules in the crystal structure (water and ethanol for modifications 1 and 2), were the subject of experimental charge density studies based on high resolution X-ray data collected at ultra-low temperatures of 9 K (1) and 20 K (2), respectively. The molecular structures and the intermolecular interactions were found to be rather similar in the two crystal lattices, so that this study allowed the reproducibility of the charge density of a given molecule in different (but widely comparable) crystalline environments to be examined. With respect to bond topological and atomic properties, the agreement between the two modifications of the title tripeptide was in the same range as found from the comparison with the previously reported results of tri-L-alanine. It follows that the reproducibility and transferability of quantitative topological data are comparable and that within the accuracy of experimental charge density work the replacement of the central amino acid residue L-Ala by L-Tyr has no significant influence, neither on bond nor on the atomic properties of the oligopeptide main chain. Intermolecular interactions in the form of hydrogen bonds were characterized quantitatively and qualitatively by topological criteria and by mapping the charge density distribution on the Hirshfeld surface.

摘要

三肽L-丙氨酸-L-酪氨酸-L-丙氨酸的两种晶体变体,其晶体结构中具有不同的溶剂分子(变体1为水,变体2为乙醇),是基于分别在9 K(1)和20 K(2)的超低温下收集的高分辨率X射线数据进行实验电荷密度研究的对象。发现这两种晶格中的分子结构和分子间相互作用相当相似,因此这项研究能够检验给定分子在不同(但具有广泛可比性)晶体环境中的电荷密度的可重复性。关于键拓扑和原子性质,标题三肽的两种变体之间的一致性与与先前报道的三-L-丙氨酸结果的比较中发现的一致性处于相同范围。由此可见,定量拓扑数据的可重复性和可转移性是可比的,并且在实验电荷密度工作的精度范围内,用L-酪氨酸取代中心氨基酸残基L-丙氨酸对寡肽主链的键和原子性质均无显著影响。通过拓扑标准并通过将电荷密度分布映射到Hirshfeld表面,对氢键形式的分子间相互作用进行了定量和定性表征。

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