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禾谷镰刀菌、燕麦镰刀菌和拟禾谷镰刀菌中的非核糖体肽合成酶(NPS)基因以及铁载体菌素生产者NPS2的鉴定

Nonribosomal peptide synthetase (NPS) genes in Fusarium graminearum, F. culmorum and F. pseudograminearium and identification of NPS2 as the producer of ferricrocin.

作者信息

Tobiasen Carsten, Aahman Johan, Ravnholt Kristine Slot, Bjerrum Morten Jannik, Grell Morten Nedergaard, Giese Henriette

机构信息

NovoNordisk A/S, Characterisation and Structural Chemistry, Hagedornvej 1, 2820 Gentofte, Denmark.

出版信息

Curr Genet. 2007 Jan;51(1):43-58. doi: 10.1007/s00294-006-0103-0. Epub 2006 Oct 17.

DOI:10.1007/s00294-006-0103-0
PMID:17043871
Abstract

Fungi have the potential to produce a wide range of secondary metabolites including polyketides and small peptides produced by nonribosomal peptide synthetases (NPS). Fusarium graminearum is a mycotoxin producing pathogen of cereals and knowledge of the infection process is essential for the development of disease control. Bioinformatics provide a means to identify genes encoding NPSs, the products of which may act as fungal virulence factors. The F. graminearum genome sequence was analysed and similarity searches and application of prediction server service identified 15 putative NPS genes. NPS1 and NPS2, were found to be related to genes involved in NPS hydroxamate siderophore biosynthesis and chemical analysis of a F. graminearum NPS2 deletion mutant showed that this gene encodes the NPS responsible for the biosynthesis of ferricrocin. The expression of the NPS genes was analysed in Fusarium culmorum. NPS1 and NPS19 differed from the remainder of the genes, as they were only expressed during infection of barley roots and not under the different culture conditions tested. Strains of F. graminearum, F. culmorum and Fusarium pseudograminearum were examined for the presence and expression of the 15 identified NPS genes. With the exception of NPS18, that is absent in F. pseudograminearum, all the NPS genes are represented in the diffferent species. Lack of transcripts from some genes and the presence of frameshift and stop codons in four of the NPS genes in the sequenced F. graminearum strain suggest that some are pseudogenes.

摘要

真菌有潜力产生多种次级代谢产物,包括由非核糖体肽合成酶(NPS)产生的聚酮化合物和小肽。禾谷镰刀菌是一种产生霉菌毒素的谷物病原体,了解其感染过程对于疾病控制的发展至关重要。生物信息学提供了一种识别编码NPS基因的方法,其产物可能作为真菌毒力因子。对禾谷镰刀菌的基因组序列进行了分析,通过相似性搜索和预测服务器服务的应用,鉴定出15个假定的NPS基因。发现NPS1和NPS2与参与NPS异羟肟酸铁载体生物合成的基因相关,对禾谷镰刀菌NPS2缺失突变体的化学分析表明,该基因编码负责铁载体生物合成的NPS。在燕麦镰刀菌中分析了NPS基因的表达。NPS1和NPS19与其余基因不同,因为它们仅在感染大麦根期间表达,而在测试的不同培养条件下不表达。检查了禾谷镰刀菌、燕麦镰刀菌和拟禾谷镰刀菌菌株中15个已鉴定的NPS基因的存在和表达情况。除了拟禾谷镰刀菌中不存在的NPS18外,所有NPS基因在不同物种中都有代表。测序的禾谷镰刀菌菌株中一些基因缺乏转录本,并且四个NPS基因中存在移码和终止密码子,这表明其中一些是假基因。

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