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细胞色素P450cam中血红素-7-丙酸侧链作为调节水分子进入底物结合位点的通道的作用。

A role of the heme-7-propionate side chain in cytochrome P450cam as a gate for regulating the access of water molecules to the substrate-binding site.

作者信息

Hayashi Takashi, Harada Katsuyoshi, Sakurai Keisuke, Shimada Hideo, Hirota Shun

机构信息

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan.

出版信息

J Am Chem Soc. 2009 Feb 4;131(4):1398-400. doi: 10.1021/ja807420k.

Abstract

Cytochrome P450cam is a heme-containing enzyme which catalyzes hydroxylation of d-camphor. The heme is bound in the heme pocket via noncovalent interactions, where two heme-propionate side chains interact with Arg, His, and/or Asp residues. To understand the role of the heme-7-propionate side chain, we prepared reconstituted P450cam with an artificial one-legged heme which has a methyl group at the position of the 7-propionate. Removal of 7-propionate dramatically decreases the d-camphor affinity by 3 orders of magnitude relative to that of the wild-type enzyme, and spectroscopic data indicate that 74% of the ferric P450cam exhibits a low-spin state owing to water molecule occupancy in the substrate-binding site under the normal assay conditions. Thus, the monooxygenase activity of the reconstituted protein is remarkably low due to the decrease in the rate of the first electron transfer from reduced putidaredoxin, whereas 87% of oxidized NADH was utilized to produce 5-hydroxy-d-camphor without any significant uncoupling reactions. X-ray structural analysis of the reconstituted enzyme reveals a novel water array extending from the substrate-binding site to bulk solvent through the position occupied by 7-propionate. This water array appears without causing any major changes in the protein structure with the notable exception of conformational changes occurring at Asp297 and Gln322 residues. We propose that the 7-propionate forms a barrier against entry of bulk water molecules and therefore in combination with Asp297, Arg299, and Gln322 plays an essential role in the process of elimination of the substrate-binding site water cluster which occurs upon d-camphor binding.

摘要

细胞色素P450cam是一种含血红素的酶,可催化d-樟脑的羟基化反应。血红素通过非共价相互作用结合在血红素口袋中,其中两个血红素丙酸侧链与精氨酸、组氨酸和/或天冬氨酸残基相互作用。为了了解血红素-7-丙酸侧链的作用,我们用一种人工单支链血红素制备了重组P450cam,该血红素在7-丙酸位置有一个甲基。相对于野生型酶,去除7-丙酸会使d-樟脑亲和力显著降低3个数量级,光谱数据表明,在正常测定条件下,74%的铁细胞色素P450cam由于底物结合位点中水分子的占据而呈现低自旋状态。因此,由于来自还原型恶臭假单胞菌铁氧还蛋白的首次电子转移速率降低,重组蛋白的单加氧酶活性非常低,而87%的氧化型NADH被用于生成5-羟基-d-樟脑,且没有任何明显的解偶联反应。重组酶的X射线结构分析揭示了一种新的水阵列,它从底物结合位点通过7-丙酸占据的位置延伸到大量溶剂中。除了天冬氨酸297和谷氨酰胺322残基发生构象变化外,这种水阵列的出现没有引起蛋白质结构的任何重大变化。我们提出,7-丙酸形成了一道阻止大量水分子进入的屏障,因此与天冬氨酸297、精氨酸299和谷氨酰胺322一起,在d-樟脑结合时发生的底物结合位点水簇消除过程中起着至关重要的作用。

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