• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

免疫原性表位预测的方法与方案。

Methods and protocols for prediction of immunogenic epitopes.

作者信息

Tong Joo Chuan, Tan Tin Wee, Ranganathan Shoba

机构信息

Institute of Infocomm Research, Singapore.

出版信息

Brief Bioinform. 2007 Mar;8(2):96-108. doi: 10.1093/bib/bbl038. Epub 2006 Oct 31.

DOI:10.1093/bib/bbl038
PMID:17077136
Abstract

T-cell recognition of peptide/major histocompatibility complex (MHC) is a prerequisite for cellular immunity. Recently, there has been an influx of bioinformatics tools to facilitate the identification of T-cell epitopes to specific MHC alleles. This article examines existing computational strategies for the study of peptide/MHC interactions. The most important bioinformatics tools and methods with relevance to the study of peptide/MHC interactions have been reviewed. We have also provided guidelines for predicting antigenic peptides based on the availability of existing experimental data.

摘要

T细胞对肽/主要组织相容性复合体(MHC)的识别是细胞免疫的前提条件。最近,大量生物信息学工具涌入,以促进针对特定MHC等位基因的T细胞表位的鉴定。本文研究了用于肽/MHC相互作用研究的现有计算策略。已对与肽/MHC相互作用研究相关的最重要的生物信息学工具和方法进行了综述。我们还根据现有实验数据的可用性提供了预测抗原肽的指导原则。

相似文献

1
Methods and protocols for prediction of immunogenic epitopes.免疫原性表位预测的方法与方案。
Brief Bioinform. 2007 Mar;8(2):96-108. doi: 10.1093/bib/bbl038. Epub 2006 Oct 31.
2
MAPPP: MHC class I antigenic peptide processing prediction.MAPPP:主要组织相容性复合体I类抗原肽加工预测
Appl Bioinformatics. 2003;2(3):155-8.
3
Efficient peptide-MHC-I binding prediction for alleles with few known binders.针对已知结合肽较少的等位基因进行高效的肽-MHC-I结合预测。
Bioinformatics. 2008 Feb 1;24(3):358-66. doi: 10.1093/bioinformatics/btm611. Epub 2007 Dec 14.
4
MHCPred: bringing a quantitative dimension to the online prediction of MHC binding.MHCPred:为MHC结合的在线预测引入定量维度。
Appl Bioinformatics. 2003;2(1):63-6.
5
POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties.POPI:通过挖掘信息丰富的物理化学性质预测MHC I类结合肽的免疫原性
Bioinformatics. 2007 Apr 15;23(8):942-9. doi: 10.1093/bioinformatics/btm061. Epub 2007 Mar 24.
6
Prediction of T-cell epitopes using biosupport vector machines.使用生物支持向量机预测T细胞表位
J Chem Inf Model. 2005 Sep-Oct;45(5):1424-8. doi: 10.1021/ci050004t.
7
T-cell epitope mapping.T细胞表位图谱分析
Ann Allergy Asthma Immunol. 2009 Jul;103(1):76-9. doi: 10.1016/S1081-1206(10)60147-0.
8
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.使用一种新型吉布斯采样方法改进对MHC I类和II类表位的预测。
Bioinformatics. 2004 Jun 12;20(9):1388-97. doi: 10.1093/bioinformatics/bth100. Epub 2004 Feb 12.
9
Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE.利用TEPITOPE发现混杂的HLA-II限制性T细胞表位
Methods. 2004 Dec;34(4):468-75. doi: 10.1016/j.ymeth.2004.06.002.
10
Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides.HLA-DQ3.2β配体的预测:II类结合肽中多寄存器的证据。
Bioinformatics. 2006 May 15;22(10):1232-8. doi: 10.1093/bioinformatics/btl071. Epub 2006 Mar 1.

引用本文的文献

1
An Immunoinformatic-Based In Silico Identification on the Creation of a Multiepitope-Based Vaccination Against the Nipah Virus.基于免疫信息学的尼帕病毒多表位疫苗的计算机辅助设计。
Biomed Res Int. 2024 Jun 26;2024:4066641. doi: 10.1155/2024/4066641. eCollection 2024.
2
Head and Neck Cancer Immunotherapy: Molecular Biological Aspects of Preclinical and Clinical Research.头颈癌免疫疗法:临床前和临床研究的分子生物学方面
Cancers (Basel). 2023 Jan 30;15(3):852. doi: 10.3390/cancers15030852.
3
COVID-19: A systematic review and update on prevention, diagnosis, and treatment.
新型冠状病毒肺炎:预防、诊断及治疗的系统评价与更新
MedComm (2020). 2022 Feb 17;3(1):e115. doi: 10.1002/mco2.115. eCollection 2022 Mar.
4
Weighted lambda superstrings applied to vaccine design.加权 lambda 超弦在疫苗设计中的应用。
PLoS One. 2019 Feb 8;14(2):e0211714. doi: 10.1371/journal.pone.0211714. eCollection 2019.
5
Structure-based Methods for Binding Mode and Binding Affinity Prediction for Peptide-MHC Complexes.基于结构的方法预测肽-MHC 复合物的结合模式和结合亲和力。
Curr Top Med Chem. 2018;18(26):2239-2255. doi: 10.2174/1568026619666181224101744.
6
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis.一项关于肽与与强直性脊柱炎差异相关的HLA - B27亚型结合的pH依赖性的计算对接研究。
J Comput Aided Mol Des. 2016 Jul;30(7):569-81. doi: 10.1007/s10822-016-9934-z. Epub 2016 Aug 9.
7
In silico analysis of an envelope domain III-based multivalent fusion protein as a potential dengue vaccine candidate.基于包膜结构域III的多价融合蛋白作为潜在登革热疫苗候选物的计算机模拟分析。
Clin Exp Vaccine Res. 2016 Jan;5(1):41-9. doi: 10.7774/cevr.2016.5.1.41. Epub 2016 Jan 27.
8
Computational design, functional analysis and antigenic epitope estimation of a novel hybrid of 12 peptides of hirudin and reteplase.水蛭素与瑞替普酶12肽新型杂交体的计算设计、功能分析及抗原表位预测
J Mol Model. 2015 Sep;21(9):229. doi: 10.1007/s00894-015-2774-2. Epub 2015 Aug 13.
9
Enhancing in silico protein-based vaccine discovery for eukaryotic pathogens using predicted peptide-MHC binding and peptide conservation scores.利用预测的肽-MHC结合和肽保守性评分增强针对真核病原体的基于计算机蛋白质的疫苗发现。
PLoS One. 2014 Dec 29;9(12):e115745. doi: 10.1371/journal.pone.0115745. eCollection 2014.
10
Monoclonal antibody preparation and expression profile analysis of a novel hepatoma associated gene.一种新型肝癌相关基因的单克隆抗体制备及表达谱分析
Pathol Oncol Res. 2014 Apr;20(2):349-56. doi: 10.1007/s12253-013-9703-4. Epub 2013 Nov 9.