Kalyuzhnaya Marina G, De Marco Paolo, Bowerman Sarah, Pacheco Catarina C, Lara Jimmie C, Lidstrom Mary E, Chistoserdova Ludmila
Department of Chemical Engineering, University of Washington, Seattle, WA 98195, USA.
Instituto de Biologia Molecular e Celular, Universidade do Porto, R. Campo Alegre, 823, 4150-180 Porto, Portugal.
Int J Syst Evol Microbiol. 2006 Nov;56(Pt 11):2517-2522. doi: 10.1099/ijs.0.64422-0.
The taxonomic positions and phylogenetic relationships of two new methylotrophic isolates from Lake Washington (USA) sediment, FAM5T and 500, and the previously described methylotrophic strain EHg5 isolated from contaminated soil in Estarreja (Portugal) were investigated. All three strains were facultative methylotrophs capable of growth on a variety of C1 and multicarbon compounds. Optimal growth occurred at pH 7.5-8 and 30-37 degrees C. The major fatty acids were C16:1omega7c and C16:0. The major quinone was ubiquinone Q8. Neither methanol dehydrogenase nor methanol oxidase activities were detectable in cells grown on methanol, suggesting an alternative, as-yet unknown, mechanism for methanol oxidation. The isolates assimilated C1 units at the level of formaldehyde, via the serine cycle. The DNA G+C content of the strains ranged between 64 and 65 mol%. 16S rRNA gene sequence similarity between the three new isolates was 99.85-100%, but was below 94% with other members of the Betaproteobacteria, indicating that the isolates represent a novel taxon. Based on physiological, phenotypic and genomic characteristics of the three isolates, a new genus, Methyloversatilis gen. nov., is proposed within the family Rhodocyclaceae. The type strain of Methyloversatilis universalis gen. nov., sp. nov. is FAM5T (=CCUG 52030T=JCM 13912T).
对从美国华盛顿湖沉积物中分离出的两株新型甲基营养菌FAM5T和500,以及之前描述的从葡萄牙埃斯塔雷亚受污染土壤中分离出的甲基营养菌EHg5的分类地位和系统发育关系进行了研究。所有三株菌都是兼性甲基营养菌,能够在多种C1化合物和多碳化合物上生长。最适生长pH为7.5 - 8,温度为30 - 37摄氏度。主要脂肪酸为C16:1ω7c和C16:0。主要醌类为泛醌Q8。在以甲醇为培养基生长的细胞中未检测到甲醇脱氢酶和甲醇氧化酶活性,这表明存在一种替代的、尚未明确的甲醇氧化机制。这些分离株通过丝氨酸循环在甲醛水平同化C1单位。这些菌株的DNA G+C含量在64至65 mol%之间。三株新分离株之间的16S rRNA基因序列相似性为99.85 - 100%,但与β-变形菌纲的其他成员相似性低于94%,表明这些分离株代表一个新的分类单元。基于这三株分离株的生理、表型和基因组特征,在红环菌科内提出了一个新属——嗜甲基游动菌属(Methyloversatilis gen. nov.)。嗜甲基游动菌新种(Methyloversatilis universalis gen. nov., sp. nov.)的模式菌株为FAM5T(=CCUG 52030T=JCM 13912T)。