Belyi Vladimir A, Muthukumar M
Department of Polymer Science and Engineering, University of Massachusetts, Amherst, MA 01003, USA.
Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17174-8. doi: 10.1073/pnas.0608311103. Epub 2006 Nov 7.
Many ssRNA/ssDNA viruses bind their genome by highly basic semiflexible peptide arms of capsid proteins. Here, we show that nonspecific electrostatic interactions control both the length of the genome and genome conformations. Analysis of available experimental data shows that the genome length is linear in the net charge on the capsid peptide arms, irrespective of the actual amino acid sequence, with a proportionality coefficient of 1.61 +/- 0.03. This ratio is conserved across all ssRNA/ssDNA viruses with highly basic peptide arms, and is different from the one-to-one charge balance expected of specific binding. Genomic nucleotides are predicted to occupy a radially symmetric spherical shell detached from the viral capsid, in agreement with experimental data.
许多单链RNA/单链DNA病毒通过衣壳蛋白高度碱性的半柔性肽臂结合其基因组。在此,我们表明非特异性静电相互作用控制着基因组的长度和基因组构象。对现有实验数据的分析表明,无论实际氨基酸序列如何,基因组长度与衣壳肽臂上的净电荷呈线性关系,比例系数为1.61±0.03。在所有具有高度碱性肽臂的单链RNA/单链DNA病毒中,这一比例都是保守的,且不同于特异性结合预期的一对一电荷平衡。预测基因组核苷酸占据一个与病毒衣壳分离的径向对称球壳,这与实验数据一致。