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1
Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching.
Science. 2006 Nov 17;314(5802):1139-43. doi: 10.1126/science.1131398.
2
Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism.
Science. 2006 Nov 17;314(5802):1144-7. doi: 10.1126/science.1131399.
4
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.
Biophys J. 2006 Feb 15;90(4):1419-31. doi: 10.1529/biophysj.105.069252. Epub 2005 Nov 18.
5
Structural and mechanistic basis of reiterative transcription initiation.
Proc Natl Acad Sci U S A. 2022 Feb 1;119(5). doi: 10.1073/pnas.2115746119.
6
The mechanism of variability in transcription start site selection.
Elife. 2017 Nov 23;6:e32038. doi: 10.7554/eLife.32038.
7
Mechanism of transcription initiation and promoter escape by . RNA polymerase.
Proc Natl Acad Sci U S A. 2017 Apr 11;114(15):E3032-E3040. doi: 10.1073/pnas.1618675114. Epub 2017 Mar 27.

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1
Pol III escapes the promoter using a "protein spring" mechanism.
Sci China Life Sci. 2025 Sep 5. doi: 10.1007/s11427-025-3028-x.
2
Recent advances in mycobacterial transcription: insights beyond the general pathway.
J Bacteriol. 2025 Jul 24;207(7):e0015425. doi: 10.1128/jb.00154-25. Epub 2025 Jun 24.
3
Deciphering the human TopIIIα activity modulated by Rmi1 using magnetic tweezers.
Nucleic Acids Res. 2025 Apr 22;53(8). doi: 10.1093/nar/gkaf308.
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'Splice-at-will' Cas12a crRNA engineering enabled direct quantification of ultrashort RNAs.
Nucleic Acids Res. 2025 Jan 11;53(2). doi: 10.1093/nar/gkaf002.
6
Transcription Kinetics in the Coronavirus Life Cycle.
Wiley Interdiscip Rev RNA. 2025 Jan-Feb;16(1):e70000. doi: 10.1002/wrna.70000.
9
Chromatin Buffers Torsional Stress During Transcription.
bioRxiv. 2024 Oct 18:2024.10.15.618270. doi: 10.1101/2024.10.15.618270.
10
Bacterial chromatin proteins, transcription, and DNA topology: Inseparable partners in the control of gene expression.
Mol Microbiol. 2024 Jul;122(1):81-112. doi: 10.1111/mmi.15283. Epub 2024 Jun 7.

本文引用的文献

1
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.
Biophys J. 2006 Feb 15;90(4):1419-31. doi: 10.1529/biophysj.105.069252. Epub 2005 Nov 18.
2
Direct observation of base-pair stepping by RNA polymerase.
Nature. 2005 Nov 24;438(7067):460-5. doi: 10.1038/nature04268. Epub 2005 Nov 13.
3
Picocalorimetry of transcription by RNA polymerase.
Biophys J. 2005 Dec;89(6):L61-3. doi: 10.1529/biophysj.105.074195. Epub 2005 Oct 20.
5
The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II.
Mol Cell. 2005 Jul 1;19(1):101-10. doi: 10.1016/j.molcel.2005.05.024.
6
Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase.
J Biol Chem. 2004 Oct 22;279(43):44277-85. doi: 10.1074/jbc.M409118200. Epub 2004 Aug 25.
7
Cross-linking of promoter DNA to T7 RNA polymerase does not prevent formation of a stable elongation complex.
J Biol Chem. 2004 Oct 22;279(43):44270-6. doi: 10.1074/jbc.M407688200. Epub 2004 Aug 10.
8
Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.
Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4776-80. doi: 10.1073/pnas.0307241101. Epub 2004 Mar 22.
9
Single-molecule DNA nanomanipulation: detection of promoter-unwinding events by RNA polymerase.
Methods Enzymol. 2003;370:577-98. doi: 10.1016/S0076-6879(03)70049-4.
10
Bacterial RNA polymerases: the wholo story.
Curr Opin Struct Biol. 2003 Feb;13(1):31-9. doi: 10.1016/s0959-440x(02)00005-2.

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