• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于通过基于成本的度量和比对来比较多神经元放电序列的动态规划算法。

Dynamic programming algorithms for comparing multineuronal spike trains via cost-based metrics and alignments.

作者信息

Victor Jonathan D, Goldberg David H, Gardner Daniel

机构信息

Department of Neurology and Neuroscience, Weill Medical College of Cornell University, 1300 York Avenue, New York City, NY 10021, USA.

出版信息

J Neurosci Methods. 2007 Apr 15;161(2):351-60. doi: 10.1016/j.jneumeth.2006.11.001. Epub 2006 Dec 15.

DOI:10.1016/j.jneumeth.2006.11.001
PMID:17174403
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1995551/
Abstract

Cost-based metrics formalize notions of distance, or dissimilarity, between two spike trains, and are applicable to single- and multineuronal responses. As such, these metrics have been used to characterize neural variability and neural coding. By examining the structure of an efficient algorithm [Aronov D, 2003. Fast algorithm for the metric-space analysis of simultaneous responses of multiple single neurons. J Neurosci Methods 124(2), 175-79] implementing a metric for multineuronal responses, we determine criteria for its generalization, and identify additional efficiencies that are applicable when related dissimilarity measures are computed in parallel. The generalized algorithm provides the means to test a wide range of coding hypotheses.

摘要

基于成本的度量标准将两个脉冲序列之间的距离或不相似性概念形式化,并且适用于单神经元和多神经元反应。因此,这些度量标准已被用于表征神经变异性和神经编码。通过研究一种有效算法的结构 [阿罗诺夫 D,2003 年。用于多个单个神经元同步反应的度量空间分析的快速算法。《神经科学方法杂志》124(2),175 - 79],该算法实现了一种用于多神经元反应的度量标准,我们确定了其泛化的标准,并识别出在并行计算相关不相似性度量时适用的其他效率。这种泛化算法提供了测试广泛编码假设的方法。

相似文献

1
Dynamic programming algorithms for comparing multineuronal spike trains via cost-based metrics and alignments.用于通过基于成本的度量和比对来比较多神经元放电序列的动态规划算法。
J Neurosci Methods. 2007 Apr 15;161(2):351-60. doi: 10.1016/j.jneumeth.2006.11.001. Epub 2006 Dec 15.
2
Fast algorithm for the metric-space analysis of simultaneous responses of multiple single neurons.用于多个单个神经元同步反应的度量空间分析的快速算法
J Neurosci Methods. 2003 Apr 15;124(2):175-9. doi: 10.1016/s0165-0270(03)00006-2.
3
Spike train metrics.脉冲序列指标
Curr Opin Neurobiol. 2005 Oct;15(5):585-92. doi: 10.1016/j.conb.2005.08.002.
4
A pattern grouping algorithm for analysis of spatiotemporal patterns in neuronal spike trains. 2. Application to simultaneous single unit recordings.一种用于分析神经元放电序列时空模式的模式分组算法。2. 在同步单神经元记录中的应用。
J Neurosci Methods. 2001 Jan 30;105(1):15-24. doi: 10.1016/s0165-0270(00)00337-x.
5
Neural decoding with kernel-based metric learning.基于核度量学习的神经解码
Neural Comput. 2014 Jun;26(6):1080-107. doi: 10.1162/NECO_a_00591. Epub 2014 Mar 31.
6
Tracking spike-amplitude changes to improve the quality of multineuronal data analysis.追踪尖峰幅度变化以提高多神经元数据分析的质量。
IEEE Trans Biomed Eng. 2007 Feb;54(2):262-72. doi: 10.1109/TBME.2006.886934.
7
A new multineuron spike train metric.一种新的多神经元尖峰序列度量指标。
Neural Comput. 2008 Jun;20(6):1495-511. doi: 10.1162/neco.2007.10-06-350.
8
Wavelet-based processing of neuronal spike trains prior to discriminant analysis.在判别分析之前对神经元尖峰序列进行基于小波的处理。
J Neurosci Methods. 2004 Apr 30;134(2):159-68. doi: 10.1016/j.jneumeth.2003.11.007.
9
Optimization of population decoding with distance metrics.基于距离测度的群体解码优化。
Neural Netw. 2010 Aug;23(6):728-32. doi: 10.1016/j.neunet.2010.04.007. Epub 2010 May 5.
10
Introduction: stability and pattern formation in networks of dynamical systems.引言:动态系统网络中的稳定性与模式形成
Chaos. 2006 Mar;16(1):015101. doi: 10.1063/1.2185009.

引用本文的文献

1
Unsupervised Detection of Cell-Assembly Sequences by Similarity-Based Clustering.基于相似度聚类的细胞集合序列无监督检测
Front Neuroinform. 2019 May 31;13:39. doi: 10.3389/fninf.2019.00039. eCollection 2019.
2
Nucleotide-time alignment for molecular recorders.分子记录器的核苷酸-时间比对
PLoS Comput Biol. 2017 May 1;13(5):e1005483. doi: 10.1371/journal.pcbi.1005483. eCollection 2017 May.
3
Estimating summary statistics in the spike-train space.在脉冲序列空间中估计汇总统计量。
J Comput Neurosci. 2013 Jun;34(3):391-410. doi: 10.1007/s10827-012-0427-3. Epub 2012 Oct 5.
4
An information-geometric framework for statistical inferences in the neural spike train space.神经脉冲序列空间中统计推断的信息几何框架。
J Comput Neurosci. 2011 Nov;31(3):725-48. doi: 10.1007/s10827-011-0336-x. Epub 2011 May 17.
5
Spike train analysis toolkit: enabling wider application of information-theoretic techniques to neurophysiology.尖峰序列分析工具包:使信息论技术在神经生理学中的应用更加广泛。
Neuroinformatics. 2009 Sep;7(3):165-78. doi: 10.1007/s12021-009-9049-y. Epub 2009 May 28.
6
Identification and clustering of event patterns from in vivo multiphoton optical recordings of neuronal ensembles.从神经元群体的体内多光子光学记录中识别事件模式并进行聚类。
J Neurophysiol. 2008 Jul;100(1):495-503. doi: 10.1152/jn.01310.2007. Epub 2008 May 21.

本文引用的文献

1
Spike train metrics.脉冲序列指标
Curr Opin Neurobiol. 2005 Oct;15(5):585-92. doi: 10.1016/j.conb.2005.08.002.
2
Using models of nucleotide evolution to build phylogenetic trees.使用核苷酸进化模型构建系统发育树。
Dev Comp Immunol. 2005;29(3):211-27. doi: 10.1016/j.dci.2004.07.007.
3
Non-Euclidean properties of spike train metric spaces.脉冲序列度量空间的非欧几里得性质
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Jun;69(6 Pt 1):061905. doi: 10.1103/PhysRevE.69.061905. Epub 2004 Jun 2.
4
Maximum likelihood difference scaling.最大似然差异标度法
J Vis. 2003;3(8):573-85. doi: 10.1167/3.8.5. Epub 2003 Oct 7.
5
From another angle: Differences in cortical coding between fine and coarse discrimination of orientation.
J Neurophysiol. 2004 Mar;91(3):1193-202. doi: 10.1152/jn.00829.2003. Epub 2003 Nov 12.
6
Chronic, multisite, multielectrode recordings in macaque monkeys.猕猴的慢性、多部位、多电极记录
Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):11041-6. doi: 10.1073/pnas.1934665100. Epub 2003 Sep 5.
7
Fast algorithm for the metric-space analysis of simultaneous responses of multiple single neurons.用于多个单个神经元同步反应的度量空间分析的快速算法
J Neurosci Methods. 2003 Apr 15;124(2):175-9. doi: 10.1016/s0165-0270(03)00006-2.
8
Neural coding of spatial phase in V1 of the macaque monkey.猕猴初级视觉皮层(V1)中空间相位的神经编码
J Neurophysiol. 2003 Jun;89(6):3304-27. doi: 10.1152/jn.00826.2002. Epub 2003 Jan 29.
9
Techniques for long-term multisite neuronal ensemble recordings in behaving animals.行为动物长期多部位神经元集群记录技术。
Methods. 2001 Oct;25(2):121-50. doi: 10.1006/meth.2001.1231.
10
Reduced space sequence alignment.简化空间序列比对
Comput Appl Biosci. 1997 Feb;13(1):45-53. doi: 10.1093/bioinformatics/13.1.45.