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自然种群统计学。II. 从隐性母亲后代中估算等位基因概率。

Statistics of Natural Populations. II. Estimating an Allele Probability in Families Descended from Cryptic Mothers.

机构信息

Department of Genetics, University of Georgia, Athens, Georgia 30602.

出版信息

Genetics. 1985 Apr;109(4):785-98. doi: 10.1093/genetics/109.4.785.

DOI:10.1093/genetics/109.4.785
PMID:17246258
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1202507/
Abstract

In population studies, adults are frequently difficult or inconvenient to identify for genotype, but a family profile of genotypes can be obtained from an unidentified female crossed with a single unidentified male. The problem is to estimate an allele frequency in the cryptic parental gene pool from the observed family profiles. For example, a worker may wish to estimate inversion frequencies in Drosophila; inversion karyotypes are cryptic in adults but visible in salivary gland squashes from larvae. A simple mixture model, which assumes the Hardy-Weinberg law, Mendelian laws and a single randomly chosen mate per female, provides the vehicle for studying three competing estimators of an allele frequency. A simple, heuristically appealing estimator called the Dobzhansky estimator is compared with the maximum likelihood estimator and a close relative called the grouped profiles estimator. The Dobzhansky estimator is computationally simple, consistent and highly efficient and is recommended in practice over its competitors.

摘要

在群体研究中,成年人的基因型往往难以或不便确定,但可以从一个与单个未识别的雄性杂交的未知女性那里获得基因型的家族谱。问题是要从观察到的家族谱中估计隐性亲本基因库中的等位基因频率。例如,研究人员可能希望估计果蝇中的倒位频率;在成体中,倒位染色体组型是隐性的,但在幼虫的唾液腺压片中是可见的。一个简单的混合模型,假设哈迪-温伯格定律、孟德尔定律和每个雌性随机选择一个配偶,为研究三种竞争的等位基因频率估计器提供了工具。一个简单的、直观上吸引人的估计器称为多布赞斯基估计器,它与最大似然估计器和一个称为分组谱估计器的近亲进行了比较。多布赞斯基估计器计算简单、一致且高效,在实践中优于其竞争对手。

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引用本文的文献

1
The estimation of parental genotypes by the analysis of a fixed number of their offspring.通过分析固定数量的后代来估计父母的基因型。
Genetics. 1988 Jun;119(2):465-72. doi: 10.1093/genetics/119.2.465.
2
Estimation of the allele number in a natural population by the method of isofemale lines.通过单雌系方法估计自然种群中的等位基因数。
Genetics. 1987 Dec;117(4):795-801. doi: 10.1093/genetics/117.4.795.
3
Four decades of inversion polymorphism in Drosophila pseudoobscura.果蝇拟暗果蝇四十年的倒位多态性。
Proc Natl Acad Sci U S A. 1991 Nov 15;88(22):10367-71. doi: 10.1073/pnas.88.22.10367.

本文引用的文献

1
Chromosomal sequences and interisland colonizations in hawaiian Drosophila.夏威夷果蝇的染色体序列和岛屿间的殖民化。
Genetics. 1983 Mar;103(3):465-82. doi: 10.1093/genetics/103.3.465.