Ginn Timothy R, Loge Frank J
Department of Civil and Environmental Engineering, University of California, Davis, CA 95616, USA.
Math Biosci. 2007 Jul;208(1):325-43. doi: 10.1016/j.mbs.2006.12.003. Epub 2006 Dec 24.
Applied population dynamics modeling is relied upon with increasing frequency to quantify how human activities affect human and non-human populations. Current techniques include variously the population's spatial transport, age, size, and physiology, but typically not the life-histories of exposure to other important things occurring in the ambient environment, such as chemicals, heat, or radiation. Consequently, the effects of such 'abiotic' aspects of an ecosystem on populations are only currently addressed through individual-based modeling approaches that despite broad utility are limited in their applicability to realistic ecosystems [V. Grimm, Ten years of individual-based modeling in ecology: what have we learned and what could we learn in the future? Ecol. Model. 115 (1999) 129-148][1]. We describe a new category of population dynamics modeling, wherein population dynamical states of the biotic phases are structured on dose, and apply this framework to demonstrate how chemical species or other ambient aspects can be included in population dynamics in three separate examples involving growth suppression in fish, inactivation of microorganisms with ultraviolet irradiation, and metabolic lag in population growth. Dose-structuring is based on a kinematic approach that is a simple generalization of age-structuring, views the ecosystem as a multi-component mixture with reacting biotic/abiotic components. The resulting model framework accommodates (a) different memories of exposure as in recovery from toxic ambient conditions, (b) differentiation between exogenous and endogenous sources of variation in population response, and (c) quantification of acute or sub-acute effects on populations arising from life-history exposures to abiotic species. Classical models do not easily address the very important fact that organisms differ and have different experiences over their life cycle. The dose structuring is one approach to incorporate some of these elements into the existing structures of the classical models, while retaining many of the features (and other limitations) of classical models.
应用种群动态建模越来越频繁地被用于量化人类活动如何影响人类和非人类种群。当前的技术包括种群的空间迁移、年龄、大小和生理状况等各个方面,但通常不涉及暴露于环境中其他重要因素(如化学物质、热量或辐射)的生活史。因此,目前生态系统中此类“非生物”因素对种群的影响仅通过基于个体的建模方法来解决,尽管这些方法具有广泛的实用性,但在应用于现实生态系统时仍受到限制[V. 格林姆,生态学中基于个体建模的十年:我们学到了什么以及未来还能学到什么?生态模型。115 (1999) 129 - 148][1]。我们描述了一种新的种群动态建模类别,其中生物阶段的种群动态状态基于剂量构建,并应用此框架在三个单独的例子中展示如何将化学物质或其他环境因素纳入种群动态,这三个例子分别涉及鱼类生长抑制、紫外线照射使微生物失活以及种群生长中的代谢滞后。剂量构建基于一种运动学方法,该方法是年龄构建的简单推广,将生态系统视为具有反应性生物/非生物成分的多组分混合物。由此产生的模型框架能够适应:(a) 如从有毒环境条件恢复时不同的暴露记忆;(b) 种群反应中外源和内源变异来源之间的差异;以及 (c) 量化因生活史暴露于非生物物种而对种群产生的急性或亚急性影响。经典模型不容易处理生物体在其生命周期中存在差异且有不同经历这一非常重要的事实。剂量构建是一种将其中一些要素纳入经典模型现有结构的方法,同时保留经典模型的许多特征(以及其他局限性)。