Suppr超能文献

Min系统计算建模的实验指南

An experimentalist's guide to computational modelling of the Min system.

作者信息

Kruse Karsten, Howard Martin, Margolin William

机构信息

Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Str. 38, D-01187 Dresden, Germany.

出版信息

Mol Microbiol. 2007 Mar;63(5):1279-84. doi: 10.1111/j.1365-2958.2007.05607.x.

Abstract

Spatio-temporal oscillations of the Min proteins are essential for selecting the cell division site in Escherichia coli. These oscillations are a key example of a biological phenomenon that can only be understood on a systems level rather than on the level of its individual components. Here, we review the key concepts that mathematical modelling has added to our understanding of the Min system. While several different mechanisms have been proposed, in all cases the oscillations emerge from a dynamic instability of a uniform protein distribution. To generate this instability, however, the various mechanisms rely on different features of Min protein interactions and transport. We critically evaluate these mechanisms in light of recent experimental evidence. We also review the effects of fluctuations caused by low cellular concentration of Min proteins, and describe how stochastic effects may potentially influence Min protein dynamics.

摘要

Min蛋白的时空振荡对于大肠杆菌细胞分裂位点的选择至关重要。这些振荡是一种生物现象的关键例子,这种现象只有在系统层面而不是单个组件层面才能被理解。在这里,我们回顾数学建模为我们对Min系统的理解所增添的关键概念。虽然已经提出了几种不同的机制,但在所有情况下,振荡都源于均匀蛋白质分布的动态不稳定性。然而,为了产生这种不稳定性,各种机制依赖于Min蛋白相互作用和转运的不同特征。我们根据最近的实验证据对这些机制进行了批判性评估。我们还回顾了由低细胞浓度的Min蛋白引起的波动的影响,并描述了随机效应可能如何潜在地影响Min蛋白动力学。

相似文献

1
An experimentalist's guide to computational modelling of the Min system.
Mol Microbiol. 2007 Mar;63(5):1279-84. doi: 10.1111/j.1365-2958.2007.05607.x.
2
Division accuracy in a stochastic model of Min oscillations in Escherichia coli.
Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):347-52. doi: 10.1073/pnas.0505825102. Epub 2005 Dec 30.
3
Mesoscale modeling technique for studying the dynamics oscillation of Min protein: pattern formation analysis with lattice Boltzmann method.
Comput Biol Med. 2009 May;39(5):412-24. doi: 10.1016/j.compbiomed.2009.02.003. Epub 2009 Apr 1.
4
Spatial control of the cell division site by the Min system in Escherichia coli.
Environ Microbiol. 2013 Dec;15(12):3229-39. doi: 10.1111/1462-2920.12119. Epub 2013 Apr 9.
5
Min-oscillations in Escherichia coli induced by interactions of membrane-bound proteins.
Phys Biol. 2005 Jun;2(2):89-97. doi: 10.1088/1478-3975/2/2/002.
6
Intra- and intercellular fluctuations in Min-protein dynamics decrease with cell length.
Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6134-9. doi: 10.1073/pnas.0911708107. Epub 2010 Mar 22.
7
Surface waves of Min-proteins.
Phys Biol. 2007 Mar 22;4(1):38-47. doi: 10.1088/1478-3975/4/1/005.
8
Molecular Interactions of the Min Protein System Reproduce Spatiotemporal Patterning in Growing and Dividing Escherichia coli Cells.
PLoS One. 2015 May 27;10(5):e0128148. doi: 10.1371/journal.pone.0128148. eCollection 2015.
9
Predictions from a stochastic polymer model for the MinDE protein dynamics in Escherichia coli.
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 1):041916. doi: 10.1103/PhysRevE.80.041916. Epub 2009 Oct 12.
10
Non-linear Min protein interactions generate harmonics that signal mid-cell division in Escherichia coli.
PLoS One. 2017 Oct 17;12(10):e0185947. doi: 10.1371/journal.pone.0185947. eCollection 2017.

引用本文的文献

1
Location of the axon initial segment assembly can be predicted from neuronal shape.
iScience. 2024 Feb 17;27(3):109264. doi: 10.1016/j.isci.2024.109264. eCollection 2024 Mar 15.
2
Chemophoresis engine: A general mechanism of ATPase-driven cargo transport.
PLoS Comput Biol. 2022 Jul 25;18(7):e1010324. doi: 10.1371/journal.pcbi.1010324. eCollection 2022 Jul.
3
Cryo-EM structure of the MinCD copolymeric filament from Pseudomonas aeruginosa at 3.1 Å resolution.
FEBS Lett. 2019 Aug;593(15):1915-1926. doi: 10.1002/1873-3468.13471. Epub 2019 Jun 14.
4
MinE conformational dynamics regulate membrane binding, MinD interaction, and Min oscillation.
Proc Natl Acad Sci U S A. 2017 Jul 18;114(29):7497-7504. doi: 10.1073/pnas.1707385114. Epub 2017 Jun 26.
5
Mapping out Min protein patterns in fully confined fluidic chambers.
Elife. 2016 Nov 25;5:e19271. doi: 10.7554/eLife.19271.
6
Chemophoresis as a driving force for intracellular organization: Theory and application to plasmid partitioning.
Biophysics (Nagoya-shi). 2011 Sep 11;7:77-88. doi: 10.2142/biophysics.7.77. eCollection 2011.
7
DNA-relay mechanism is sufficient to explain ParA-dependent intracellular transport and patterning of single and multiple cargos.
Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):E7268-E7276. doi: 10.1073/pnas.1616118113. Epub 2016 Oct 31.
8
Theoretical Prediction of Disrupted Min Oscillation in Flattened Escherichia coli.
PLoS One. 2015 Oct 12;10(10):e0139813. doi: 10.1371/journal.pone.0139813. eCollection 2015.
9
An Optimal Free Energy Dissipation Strategy of the MinCDE Oscillator in Regulating Symmetric Bacterial Cell Division.
PLoS Comput Biol. 2015 Aug 28;11(8):e1004351. doi: 10.1371/journal.pcbi.1004351. eCollection 2015 Aug.
10
The Min system and other nucleoid-independent regulators of Z ring positioning.
Front Microbiol. 2015 May 13;6:478. doi: 10.3389/fmicb.2015.00478. eCollection 2015.

本文引用的文献

1
Mobility of Min-proteins in Escherichia coli measured by fluorescence correlation spectroscopy.
Phys Biol. 2006 Nov 28;3(4):255-63. doi: 10.1088/1478-3975/3/4/003.
2
Noise-induced Min phenotypes in E. coli.
PLoS Comput Biol. 2006 Jun 30;2(6):e80. doi: 10.1371/journal.pcbi.0020080. Epub 2006 May 18.
3
Min-protein oscillations in Escherichia coli with spontaneous formation of two-stranded filaments in a three-dimensional stochastic reaction-diffusion model.
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Feb;73(2 Pt 1):021904. doi: 10.1103/PhysRevE.73.021904. Epub 2006 Feb 13.
4
Role of MinD-membrane association in Min protein interactions.
J Bacteriol. 2006 Apr;188(8):2993-3001. doi: 10.1128/JB.188.8.2993-3001.2006.
6
Division accuracy in a stochastic model of Min oscillations in Escherichia coli.
Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):347-52. doi: 10.1073/pnas.0505825102. Epub 2005 Dec 30.
7
Spatial control of bacterial division-site placement.
Nat Rev Microbiol. 2005 Dec;3(12):959-68. doi: 10.1038/nrmicro1290.
8
FtsZ and the division of prokaryotic cells and organelles.
Nat Rev Mol Cell Biol. 2005 Nov;6(11):862-71. doi: 10.1038/nrm1745.
9
Min-oscillations in Escherichia coli induced by interactions of membrane-bound proteins.
Phys Biol. 2005 Jun;2(2):89-97. doi: 10.1088/1478-3975/2/2/002.
10
Min-protein oscillations in round bacteria.
Phys Biol. 2004 Dec;1(3-4):229-35. doi: 10.1088/1478-3967/1/4/005.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验