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田鼠亚科啮齿动物核基因组中线粒体假基因的分子分析。

Molecular analyses of mitochondrial pseudogenes within the nuclear genome of arvicoline rodents.

作者信息

Triant Deborah A, DeWoody J Andrew

机构信息

Department of Forestry and Natural Resources, Purdue University, 195 Marsteller Street, West Lafayette, IN 47907, USA.

出版信息

Genetica. 2008 Jan;132(1):21-33. doi: 10.1007/s10709-007-9145-6. Epub 2007 Feb 27.


DOI:10.1007/s10709-007-9145-6
PMID:17333478
Abstract

Nuclear sequences of mitochondrial origin (numts) are common among animals and plants. The mechanism(s) by which numts transfer from the mitochondrion to the nucleus is uncertain, but their insertions may be mediated in part by chromosomal repair mechanisms. If so, then lineages where chromosomal rearrangements are common should be good models for the study of numt evolution. Arvicoline rodents are known for their karyotypic plasticity and numt pseudogenes have been discovered in this group. Here, we characterize a 4 kb numt pseudogene in the arvicoline vole Microtus rossiaemeridionalis. This sequence is among the largest numts described for a mammal lacking a completely sequenced genome. It encompasses three protein-coding and six tRNA pseudogenes that span approximately 25% of the entire mammalian mitochondrial genome. It is bordered by a dinucleotide microsatellite repeat and contains four transposable elements within its sequence and flanking regions. To determine the phylogenetic distribution of this numt among the arvicolines, we characterized one of the mitochondrial pseudogenes (cytochrome b) in 21 additional arvicoline species. Average rates of nucleotide substitution in this arvicoline pseudogene are estimated as 2.3 x 10(-8) substitutions/per site/per year. Furthermore, we performed comparative analyses among all species to estimate the age of this mitochondrial transfer at nearly 4 MYA, predating the origin of most arvicolines.

摘要

线粒体起源的核序列(numts)在动植物中很常见。numts从线粒体转移到细胞核的机制尚不确定,但其插入可能部分由染色体重组机制介导。如果是这样,那么染色体重排常见的谱系应该是研究numt进化的良好模型。田鼠类啮齿动物以其核型可塑性而闻名,并且在该类群中已发现numt假基因。在这里,我们对田鼠类田鼠南方田鼠中的一个4 kb的numt假基因进行了表征。该序列是在缺乏完整测序基因组的哺乳动物中描述的最大numts之一。它包含三个蛋白质编码和六个tRNA假基因,跨越整个哺乳动物线粒体基因组的约25%。它由一个二核苷酸微卫星重复序列界定,并且在其序列和侧翼区域内包含四个转座元件。为了确定该numt在田鼠类中的系统发育分布,我们对另外21种田鼠类物种中的一个线粒体假基因(细胞色素b)进行了表征。该田鼠类假基因中的核苷酸替代平均速率估计为2.3×10(-8)替代/每个位点/每年。此外,我们对所有物种进行了比较分析,以估计这种线粒体转移的时间约为400万年前,早于大多数田鼠类的起源。

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Molecular analyses of mitochondrial pseudogenes within the nuclear genome of arvicoline rodents.

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[1]
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IMA Fungus. 2025-5-23

[2]
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Mol Biol Rep. 2023-12-29

[3]
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GigaByte. 2021-5-6

[4]
Comparison of detection methods and genome quality when quantifying nuclear mitochondrial insertions in vertebrate genomes.

Front Genet. 2022-11-22

[5]
The Tien Shan vole (; Rodentia: Cricetidae) as a new species in the Late Pleistocene of Europe.

Ecol Evol. 2021-11-4

[6]
Mitochondrial Genome Evolution, Genetic Diversity, and Population Structure in British Water Voles ().

Genes (Basel). 2021-1-21

[7]
Possibility of numt co-amplification from gigantic genome of Orthoptera: testing efficiency of standard PCR protocol in producing orthologous COI sequences.

Heliyon. 2018-11-23

[8]
First Report of a Mitochondrial Pseudogene in Agnathan Vertebrates (Cyclostomata: Petromyzontidae).

J Mol Evol. 2018-3-21

[9]
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Epigenomics. 2014

[10]
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PLoS One. 2012-11-7

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