铀污染地下沉积物中的酸杆菌门序列极大地扩展了该门内已知的多样性。
Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum.
作者信息
Barns Susan M, Cain Elizabeth C, Sommerville Leslie, Kuske Cheryl R
机构信息
Bioscience Division, M888, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.
出版信息
Appl Environ Microbiol. 2007 May;73(9):3113-6. doi: 10.1128/AEM.02012-06. Epub 2007 Mar 2.
Abstract
The abundance and composition of bacteria of the phylum Acidobacteria were surveyed in subsurface sediments from uranium-contaminated sites using amplification of 16S rRNA genes followed by clone/sequence analysis. Analysis of sequences from this study and public databases produced a revised and greatly expanded phylogeny of the Acidobacteria phylum consisting of 26 subgroups.
摘要
利用16S rRNA基因扩增后进行克隆/序列分析，对铀污染场地地下沉积物中酸杆菌门细菌的丰度和组成进行了调查。对本研究及公共数据库中的序列分析产生了酸杆菌门经过修订且大幅扩展的系统发育树，该系统发育树由26个亚组组成。
相似文献
1
Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum.
Appl Environ Microbiol. 2007 May;73(9):3113-6. doi: 10.1128/AEM.02012-06. Epub 2007 Mar 2.
2
Phylogenetic diversity of Acidobacteria in a former agricultural soil.
ISME J. 2009 Mar;3(3):378-82. doi: 10.1038/ismej.2008.113. Epub 2008 Nov 20.
3
Changes in soil Acidobacteria communities after 2,4,6-trinitrotoluene contamination.
FEMS Microbiol Lett. 2009 Jun;296(2):159-66. doi: 10.1111/j.1574-6968.2009.01632.x. Epub 2009 Apr 30.
4
Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil.
FEMS Microbiol Lett. 2008 Aug;285(2):263-9. doi: 10.1111/j.1574-6968.2008.01232.x. Epub 2008 Jun 28.
5
16S rRNA gene analyses of bacterial community structures in the soils of evergreen broad-leaved forests in south-west China.
FEMS Microbiol Ecol. 2006 Nov;58(2):247-59. doi: 10.1111/j.1574-6941.2006.00156.x.
6
Group-specific PCR primers for the phylum Acidobacteria designed based on the comparative analysis of 16S rRNA gene sequences.
J Microbiol Methods. 2011 Aug;86(2):195-203. doi: 10.1016/j.mimet.2011.05.003. Epub 2011 May 12.
7
Phylogenetic diversity of sediment bacteria from the southern Cretan margin, Eastern Mediterranean Sea.
Syst Appl Microbiol. 2009 Feb;32(1):17-26. doi: 10.1016/j.syapm.2008.09.006. Epub 2008 Dec 6.
8
Uncultured bacterial diversity in tropical maize (Zea mays L.) rhizosphere.
J Basic Microbiol. 2011 Feb;51(1):15-32. doi: 10.1002/jobm.201000171. Epub 2011 Jan 24.
9
Phylogenetic diversity of bacteria in an earth-cave in Guizhou province, southwest of China.
J Microbiol. 2007 Apr;45(2):105-12.
10
Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica.
Environ Microbiol. 2009 Mar;11(3):715-28. doi: 10.1111/j.1462-2920.2009.01859.x.
引用本文的文献
1
Revealing the Prokaryotic Microbial Community Structures and their Ecological Potentials in Manjanggul Cave, a Lava Tube on Jeju Island.
Curr Microbiol. 2025 Jun 12;82(8):331. doi: 10.1007/s00284-025-04318-7.
2
Vertical distribution characteristics and influencing factors of bacterial communities in a sediment profile of Bohai Sea.
Naturwissenschaften. 2025 May 9;112(3):37. doi: 10.1007/s00114-025-01989-x.
3
An ecological-evolutionary perspective on the genomic diversity and habitat preferences of the .
Microb Genom. 2025 Jan;11(1). doi: 10.1099/mgen.0.001344.
4
The Saint-Leonard Urban Glaciotectonic Cave Harbors Rich and Diverse Planktonic and Sedimentary Microbial Communities.
Microorganisms. 2024 Aug 29;12(9):1791. doi: 10.3390/microorganisms12091791.
5
Enhanced phytoremediation of cadmium-contaminated soil using chelating agents and plant growth regulators: effect and mechanism.
R Soc Open Sci. 2024 Sep 25;11(9):240672. doi: 10.1098/rsos.240672. eCollection 2024 Sep.
6
Effects of soil properties and microbial community composition on ginsenosides accumulation in farmland ginseng.
Front Bioeng Biotechnol. 2024 Sep 6;12:1462342. doi: 10.3389/fbioe.2024.1462342. eCollection 2024.
7
sp. nov., a new acidophilic representative of the isolated from fen soils.
Int J Syst Evol Microbiol. 2024 Aug;74(8). doi: 10.1099/ijsem.0.006500.
8
An ecological-evolutionary perspective on the genomic diversity and habitat preferences of the Acidobacteriota.
bioRxiv. 2024 Jul 5:2024.07.05.601421. doi: 10.1101/2024.07.05.601421.
9
Integrated management of fruit trees and : implications for soil nutrient profiles and microbial community structures.
Front Microbiol. 2024 Mar 6;15:1307677. doi: 10.3389/fmicb.2024.1307677. eCollection 2024.
10
A widely distributed genus of soil Acidobacteria genomically enriched in biosynthetic gene clusters.
ISME Commun. 2022 Aug 13;2(1):70. doi: 10.1038/s43705-022-00140-5.
本文引用的文献
1
Environmental survey for four pathogenic bacteria and closely related species using phylogenetic and functional genes.
J Forensic Sci. 2006 May;51(3):548-58. doi: 10.1111/j.1556-4029.2006.00131.x.
2
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes.
Appl Environ Microbiol. 2006 Mar;72(3):1719-28. doi: 10.1128/AEM.72.3.1719-1728.2006.
3
Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste.
FEMS Microbiol Ecol. 2005 Aug 1;53(3):417-28. doi: 10.1016/j.femsec.2005.01.010.
4
Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.
Appl Environ Microbiol. 2005 Oct;71(10):6308-18. doi: 10.1128/AEM.71.10.6308-6318.2005.
5
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D294-6. doi: 10.1093/nar/gki038.
6
Resistance of solid-phase U(VI) to microbial reduction during in situ bioremediation of uranium-contaminated groundwater.
Appl Environ Microbiol. 2004 Dec;70(12):7558-60. doi: 10.1128/AEM.70.12.7558-7560.2004.
7
Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate.
Appl Environ Microbiol. 2004 Aug;70(8):4911-20. doi: 10.1128/AEM.70.8.4911-4920.2004.
8
In situ bioreduction of technetium and uranium in a nitrate-contaminated aquifer.
Environ Sci Technol. 2004 Jan 15;38(2):468-75. doi: 10.1021/es034639p.
9
Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI).
Appl Environ Microbiol. 2003 Dec;69(12):7467-79. doi: 10.1128/AEM.69.12.7467-7479.2003.
10
Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer.
Appl Environ Microbiol. 2003 Oct;69(10):5884-91. doi: 10.1128/AEM.69.10.5884-5891.2003.
Zotero 插件