Department of Microorganisms, Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Bioinformatic Services, Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Int J Syst Evol Microbiol. 2024 Aug;74(8). doi: 10.1099/ijsem.0.006500.
Two new strains JP48 and JP55 affiliated with the acidobacterial class have been isolated from fen soil sampled in the Fichtelgebirge Mountains near Bayreuth, Germany. Both strains were Gram-stain-negative, non-motile, non-spore-forming rods that divide by binary fission, segregate exopolysaccharide-like material and form capsules. Strains JP48 and JP55 grew at 4-36 °C (optimum at 27 °C), pH 3.6-7.3 (optimum at pH 4.6-5.5) and with NaCl concentrations of 0-3% (optimum at 1.0%; w/v). Strains JP48 and JP55 grew aerobically on a wide range of organic substrates including mono- and oligosaccharides, amino acids and short-chained fatty acids. MK-8 was identified as the major respiratory quinone. The major fatty acids for strains JP48 and JP55 were -C, C ω7c, C and -diabolic acid. Phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, lysophophatidylethanolamine, phosphatidylcholine, unidentified glyco- and glycophospholipids, and unidentified high mass lipid species were the major polar membrane lipids. The G+C content of strains JP48 and JP55 was 57.4 and 57.2 mol%, respectively. The genomes of strains JP48 and JP55 contained nine potential secondary metabolite regions encoding for the compound classes NRPS(-like), T3PKS, terpene, or lanthipeptide class IV. Phylogenetic reconstruction and 16S rRNA gene sequence similarities of 98.3 and 96.9% identified DHF9 and DSM 104462 as the most closely related type strains to strains JP48 and JP55. Based on their phenotype, phylogeny and chemotaxonomy, we propose the novel species sp. nov. (type strain JP48=DSM 109919=CECT 30269; additional strain JP55=DSM 109920=CECT 30268) within the class of the phylum .
从德国巴伐利亚菲希特尔山脉的沼泽土壤中分离到两株新的与酸杆菌纲相关的菌株 JP48 和 JP55。这两株菌均为革兰氏阴性、非运动、非孢子形成的杆状菌,通过二分分裂进行分裂,分离出类似胞外多糖的物质并形成胶囊。菌株 JP48 和 JP55 在 4-36°C(最佳温度为 27°C)、pH3.6-7.3(最佳 pH4.6-5.5)和 0-3%NaCl 浓度(最佳 1.0%;w/v)下生长。菌株 JP48 和 JP55 可在广泛的有机底物上好氧生长,包括单糖和寡糖、氨基酸和短链脂肪酸。MK-8 被鉴定为主要呼吸醌。菌株 JP48 和 JP55 的主要脂肪酸为 -C、Cω7c、C 和 -diabolic 酸。磷脂酰甘油、磷脂酰乙醇胺、双磷脂酰甘油、溶血磷脂酰乙醇胺、磷脂酰胆碱、未鉴定的糖基和糖磷脂以及未鉴定的高分子量脂质种类是主要的极性膜脂质。菌株 JP48 和 JP55 的 G+C 含量分别为 57.4%和 57.2%mol%。菌株 JP48 和 JP55 的基因组包含九个潜在的次生代谢物区域,编码 NRPS(样)、T3PKS、萜烯或杆菌肽类 IV 化合物。98.3%和 96.9%的 16S rRNA 基因序列相似性的系统发育重建表明,DHF9 和 DSM 104462 与 JP48 和 JP55 最密切相关的模式株。基于它们的表型、系统发育和化学分类学,我们提出了一个新的物种,命名为 sp. nov.(模式株 JP48=DSM 109919=CECT 30269;附加菌株 JP55=DSM 109920=CECT 30268),属于酸杆菌纲的 。