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原始细胞表面反应模型中的同步现象。

Synchronization phenomena in surface-reaction models of protocells.

作者信息

Serra Roberto, Carletti Timoteo, Poli Irene

机构信息

Dipartimento di Scienze Sociali, Cognitive e Quantitative, Università di Modena e Reggio Emilia, via Allegri 9, 42100 Reggio Emilia, Italy.

出版信息

Artif Life. 2007 Spring;13(2):123-38. doi: 10.1162/artl.2007.13.2.123.

Abstract

A class of generic models of protocells is introduced, which are inspired by the Los Alamos bug hypothesis but which, due to their abstraction level, can be applied to a wider set of detailed protocell hypotheses. These models describe the coupled growth of the lipid container and of the self-replicating molecules. A technique to analyze the dynamics of populations of such protocells is described, which couples a continuous-time formalism for the growth between two successive cell divisions, and a discrete map that relates the quantity of self-replicating molecules in successive generations. This technique allows one to derive several properties in an analytical way. It is shown that, under fairly general assumptions, the two growth rates synchronize, so that the lipid container doubles its size when the number of self-replicating molecules has also doubled--thus giving rise to exponential growth of the population of protocells. Such synchronization had been postulated a priori in previous models of protocells; here it is an emergent property. We also compare the rate of duplication of two populations generated by two different protocells with different kinds of self-replicating molecules, considering the interesting case where the rate of self-replication of one kind is higher than that of the other, but its contribution to the container growth rate is smaller. It is shown that in this case the population of offspring of the protocell with the faster-replicating molecule will eventually grow faster than the other. The case where two different types of self-replicating monomers are present in the same protocell is also analyzed, and it is shown that, if the replication follows a first-order kinetic equation, then the faster replicator eventually displaces the slower one, whereas if the growth is sublinear the two coexist. It is also proven by an appropriate rescaling of time that the results that concern the system asymptotic dynamics hold both for micelles and vesicles.

摘要

我们引入了一类原始细胞的通用模型,这些模型受洛斯阿拉莫斯虫假说启发,但由于其抽象层次,可应用于更广泛的详细原始细胞假说集合。这些模型描述了脂质容器和自我复制分子的耦合生长。我们描述了一种分析此类原始细胞群体动态的技术,该技术将两个连续细胞分裂之间生长的连续时间形式与关联连续世代中自我复制分子数量的离散映射相结合。这种技术使人们能够以解析方式推导出几个性质。结果表明,在相当一般的假设下,两种生长速率同步,使得当自我复制分子数量翻倍时,脂质容器的大小也翻倍,从而导致原始细胞群体呈指数增长。这种同步在先前的原始细胞模型中是先验假设的;在此它是一种涌现性质。我们还比较了由两种具有不同种类自我复制分子的不同原始细胞产生的两个群体的复制速率,考虑一种自我复制速率高于另一种但其对容器生长速率的贡献较小的有趣情况。结果表明,在这种情况下,具有复制速度更快分子的原始细胞的后代群体最终将比另一个群体生长得更快。我们还分析了同一原始细胞中存在两种不同类型自我复制单体的情况,结果表明,如果复制遵循一阶动力学方程,那么较快的复制体最终会取代较慢的复制体,而如果生长是亚线性的,则两者共存。通过对时间进行适当的重新缩放还证明,与系统渐近动力学相关的结果对于胶束和囊泡都成立。

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